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AT2G30210.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
extracellular 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:21109274 (2011): extracellular region
  • PMID:16729891 (2006): extracellular region
  • PMID:16356755 (2006): extracellular region
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : laccase 3
Curator
Summary (TAIR10)
putative laccase, a member of laccase family of genes (17 members in Arabidopsis).
Computational
Description (TAIR10)
laccase 3 (LAC3); FUNCTIONS IN: laccase activity; INVOLVED IN: oxidation reduction, lignin catabolic process; LOCATED IN: endomembrane system, apoplast; EXPRESSED IN: hypocotyl, fruit, root, seed; EXPRESSED DURING: E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Multicopper oxidase, type 3 (InterPro:IPR011707), Laccase (InterPro:IPR017761), Multicopper oxidase, type 2 (InterPro:IPR011706), Cupredoxin (InterPro:IPR008972), Multicopper oxidase, copper-binding site (InterPro:IPR002355), Multicopper oxidase, type 1 (InterPro:IPR001117); BEST Arabidopsis thaliana protein match is: laccase 13 (TAIR:AT5G07130.1); Has 11124 Blast hits to 9161 proteins in 1586 species: Archae - 42; Bacteria - 5039; Metazoa - 506; Fungi - 3547; Plants - 1577; Viruses - 0; Other Eukaryotes - 413 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT2G30210-MONOMEREC:1.10.3.2eggNOG:COG2132eggNOG:KOG1263
EMBL:AC002338EMBL:AC004165EMBL:AK221241EMBL:CP002685
EnsemblPlants:AT2G30210EnsemblPlants:AT2G30210.1entrez:817571Gene3D:2.60.40.420
GeneID:817571Genevisible:Q56YT0GO:GO:0005507GO:GO:0016722
GO:GO:0046274GO:GO:0048046GO:GO:0052716Gramene:AT2G30210.1
hmmpanther:PTHR11709hmmpanther:PTHR11709:SF68HOGENOM:HOG000241916InParanoid:Q56YT0
InterPro:IPR001117InterPro:IPR002355InterPro:IPR008972InterPro:IPR011706
InterPro:IPR011707InterPro:IPR017761InterPro:IPR033138KEGG:ath:AT2G30210
KO:K05909OMA:TPENHPMPaxDb:Q56YT0Pfam:PF00394
Pfam:PF07731Pfam:PF07732Pfam:Q56YT0PhylomeDB:Q56YT0
PIR:T00579PRIDE:Q56YT0PRO:PR:Q56YT0PROSITE:PS00079
PROSITE:PS00080ProteinModelPortal:Q56YT0Proteomes:UP000006548RefSeq:NP_180580.1
scanprosite:PS00079scanprosite:PS00080SMR:Q56YT0STRING:3702.AT2G30210.1
SUPFAM:SSF49503TAIR:AT2G30210tair10-symbols:LAC3TIGRfam:TIGR03389
TIGRFAMs:TIGR03389TMHMM:TMhelixUniGene:At.27864UniProt:Q56YT0
Coordinates (TAIR10) chr2:-:12887735..12889827
Molecular Weight (calculated) 64030.50 Da
IEP (calculated) 9.88
GRAVY (calculated) -0.26
Length 570 amino acids
Sequence (TAIR10)
(BLAST)
001: MESFRRFSLL SFIALLAYFA FLASAEHHVH QFVITPTPVK RLCRTHQSIT VNGQYPGPTL VVRNGDSLAI TVINRARYNI SIHWHGIRQL RNPWADGPEY
101: ITQCPIRPGQ TYTYRFKIED QEGTLWWHAH SRWLRATVYG ALIIYPRLGS PYPFSMPKRD IPILLGEWWD RNPMDVLKQA QFTGAAANVS DAYTINGQPG
201: DLYRCSRAGT IRFPIFPGET VQLRVINAGM NQELFFSVAN HQFTVVETDS AYTKPFTTNV IMIGPGQTTN VLLTANQRPG RYYMAARAYN SANAPFDNTT
301: TTAILQYVNA PTRRGRGRGQ IAPVFPVLPG FNDTATATAF TNRLRYWKRA PVPQQVDENL FFTVGLGLIN CANPNSPRCQ GPNGTRFAAS MNNMSFVLPR
401: SNSVMQAYYQ GTPGIFTTDF PPVPPVQFDY TGNVSRGLWQ PIKGTKAYKL KYKSNVQIVL QDTSIVTPEN HPMHLHGYQF YVVGSGFGNF NPRTDPARFN
501: LFDPPERNTI GTPPGGWVAI RFVADNPGAW FMHCHIDSHL GWGLAMVFLV ENGRGQLQSV QAPPLDLPRC
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)