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AT2G30100.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plastid 0.994
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : pentatricopeptide (PPR) repeat-containing protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
pentatricopeptide (PPR) repeat-containing protein; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein (TAIR:AT5G04810.1); Has 68862 Blast hits to 30982 proteins in 1167 species: Archae - 27; Bacteria - 7834; Metazoa - 26033; Fungi - 2446; Plants - 28670; Viruses - 2; Other Eukaryotes - 3850 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IFK4eggNOG:ENOG410XT2SEMBL:AC004165EMBL:AK229400EMBL:CP002685EnsemblPlants:AT2G30100EnsemblPlants:AT2G30100.1
entrez:817561GeneID:817561GO:GO:0009507Gramene:AT2G30100.1hmmpanther:PTHR24015hmmpanther:PTHR24015:SF683HOGENOM:HOG000241373
InParanoid:Q0WNN7InterPro:IPR002885KEGG:ath:AT2G30100OMA:VFEWLRKPaxDb:Q0WNN7Pfam:Q0WNN7Pfscan:PS51375
PhylomeDB:Q0WNN7PIR:T00588PRIDE:Q0WNN7PRO:PR:Q0WNN7PROSITE:PS51375ProteinModelPortal:Q0WNN7Proteomes:UP000006548
RefSeq:NP_180571.3STRING:3702.AT2G30100.1TAIR:AT2G30100TIGRfam:TIGR00756TIGRFAMs:TIGR00756UniGene:At.43006UniGene:At.75197
UniProt:Q0WNN7
Coordinates (TAIR10) chr2:+:12847828..12849520
Molecular Weight (calculated) 57558.30 Da
IEP (calculated) 6.07
GRAVY (calculated) -0.18
Length 503 amino acids
Sequence (TAIR10)
(BLAST)
001: MAYAHVFASL TISTISLRRF LPRLHRNHSV KPNSRIICNL KLNYSAGKFR EMGLSRSVEL DQFITSEEEE GEAEEIGEGF FEAIEELERM TREPSDILEE
101: MNHRLSSREL QLMLVYFAQE GRDSWCTLEV FEWLKKENRV DEEIMELMVS IMCGWVKKLI EDECNAHQVF DLLIEMDCVG LKPGFSMMDK VIALYCEMGK
201: KESAVLFVKE VLRRRDGFGY SVVGGGGSEG RKGGPVGYLA WKFMVDGDYR KAVDMVMELR LSGLKPEAYS YLIAMTAIVK ELNSLGKTLR ELKRFARAGF
301: VAEIDDHDRV LIEKYQSETL SRGLQLATWA VEEGQENDSI IGVVHERLLA MYICAGRGPE AEKQLWKMKL AGREPEADLH DIVMAICASQ KEVNAVSRLL
401: TRVEFMGSQR KKKTLSWLLR GYVKGGHFEE AAETLVSMID SGLHPEYIDR VAVMQGMTRK IQRPRDVEAY MSLCKRLFDA GLVGPCLVYM YIDKYKLWIV
501: KMM
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)