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AT2G30080.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plasma membrane 0.930
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : ZIP metal ion transporter family
Curator
Summary (TAIR10)
member of Fe(II) transporter isolog family. Gene expression is not regulated by iron, copper, or zinc deficiency or excess.
Computational
Description (TAIR10)
ZIP6; FUNCTIONS IN: cation transmembrane transporter activity, metal ion transmembrane transporter activity; INVOLVED IN: cation transport, response to nematode; LOCATED IN: integral to membrane, membrane; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Zinc/iron permease, fungal/plant (InterPro:IPR004698), Zinc/iron permease (InterPro:IPR003689); BEST Arabidopsis thaliana protein match is: zinc transporter 7 precursor (TAIR:AT2G04032.1); Has 1739 Blast hits to 1619 proteins in 263 species: Archae - 0; Bacteria - 69; Metazoa - 337; Fungi - 628; Plants - 518; Viruses - 0; Other Eukaryotes - 187 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG4111GP2eggNOG:KOG1558EMBL:AC004165EMBL:AC004680EMBL:AF369910EMBL:CP002685EnsemblPlants:AT2G30080
EnsemblPlants:AT2G30080.1entrez:817559GeneID:817559Genevisible:O64738GO:GO:0005385GO:GO:0005886GO:GO:0009535
GO:GO:0009624GO:GO:0016021GO:GO:0071577Gramene:AT2G30080.1hmmpanther:PTHR11040hmmpanther:PTHR11040:SF26HOGENOM:HOG000157076
InParanoid:O64738InterPro:IPR003689InterPro:IPR004698KEGG:ath:AT2G30080OMA:LTASEHMPaxDb:O64738Pfam:O64738
Pfam:PF02535PhylomeDB:O64738PIR:T02478PRIDE:O64738PRO:PR:O64738Proteomes:UP000006548RefSeq:NP_180569.1
STRING:3702.AT2G30080.1TAIR:AT2G30080tair10-symbols:ATZIP6tair10-symbols:ZIP6TIGRfam:TIGR00820TIGRFAMs:TIGR00820TMHMM:TMhelix
UniGene:At.66278UniProt:O64738
Coordinates (TAIR10) chr2:-:12838730..12840112
Molecular Weight (calculated) 36023.70 Da
IEP (calculated) 6.03
GRAVY (calculated) 0.64
Length 341 amino acids
Sequence (TAIR10)
(BLAST)
001: MASCVTGTEA AIRAAACRDG EEASHLKIVA VFAIFLTSVF GVWGPVLLAK YFHGKPLYDK AILVIKCFAA GVILSTSLVH VLPEAFESLA DCQVSSRHPW
101: KDFPFAGLVT MIGAITALLV DLTASEHMGH GGGGGGDGGM EYMPVGKAVG GLEMKEGKCG ADLEIQENSE EEIVKMKQRL VSQVLEIGII FHSVIIGVTM
201: GMSQNKCTIR PLIAALSFHQ IFEGLGLGGC IAQAGFKAGT VVYMCLMFAV TTPLGIVLGM VIFAATGYDD QNPNALIMEG LLGSFSSGIL IYMALVDLIA
301: LDFFHNKMLT TCGESGSRLK KLCFVALVLG SASMSLLALW A
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)