suba logo
AT2G30010.1
Subcellular Consensus
(Prediction and Experimental)

min: heatmap :max

.
SUBAcon:
extracellular 0.999
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : TRICHOME BIREFRINGENCE-LIKE 45
Curator
Summary (TAIR10)
Encodes a member of the TBL (TRICHOME BIREFRINGENCE-LIKE) gene family containing a plant-specific DUF231 (domain of unknown function) domain. TBL gene family has 46 members, two of which (TBR/AT5G06700 and TBL3/AT5G01360) have been shown to be involved in the synthesis and deposition of secondary wall cellulose, presumably by influencing the esterification state of pectic polymers. A nomenclature for this gene family has been proposed (Volker Bischoff & Wolf Scheible, 2010, personal communication).
Computational
Description (TAIR10)
TRICHOME BIREFRINGENCE-LIKE 45 (TBL45); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF231, plant (InterPro:IPR004253); BEST Arabidopsis thaliana protein match is: Plant protein of unknown function (DUF828) (TAIR:AT5G58600.1); Has 1337 Blast hits to 1318 proteins in 28 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1337; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IVKTeggNOG:ENOG410YF78EMBL:AC004680EMBL:AF428324EMBL:BT020370EMBL:CP002685EnsemblPlants:AT2G30010
EnsemblPlants:AT2G30010.1entrez:817552GeneID:817552Genevisible:O80872GO:GO:0005794GO:GO:0016021GO:GO:0016413
GO:GO:0071554Gramene:AT2G30010.1hmmpanther:PTHR32285hmmpanther:PTHR32285:SF14HOGENOM:HOG000238066InParanoid:O80872InterPro:IPR025846
InterPro:IPR026057InterPro:IPR029962InterPro:IPR029981iPTMnet:O80872KEGG:ath:AT2G30010OMA:THIIHEDPANTHER:PTHR32285
PANTHER:PTHR32285:SF14PaxDb:O80872Pfam:O80872Pfam:PF13839Pfam:PF14416PhylomeDB:O80872PIR:T02484
PRIDE:O80872PRO:PR:O80872Proteomes:UP000006548RefSeq:NP_565692.1STRING:3702.AT2G30010.1TAIR:AT2G30010tair10-symbols:TBL45
UniGene:At.12754UniProt:O80872
Coordinates (TAIR10) chr2:+:12805833..12809226
Molecular Weight (calculated) 45479.00 Da
IEP (calculated) 8.73
GRAVY (calculated) -0.36
Length 398 amino acids
Sequence (TAIR10)
(BLAST)
001: MAAVQCLTFL FLFLLQNATS ASPLPLFRRP IQSNHSNFVK HPRRSQVVFP VNHSSCDLFA GEWVRDETYP LYRSKECGRG IIDPGFDCQT YGRPDSDYLK
101: FRWKPFNCNV PRFNGVKFLQ EMRDKTIMFV GDSLGRNQWE SLICMISSSA PSINTHIIHE DPLSTFKILD YNVKVSFYRA PYLVDIDKIN GKTTLKLDEI
201: SVDASNAWRT ADVLLFNTGH WWSHTGSLRG WEQMETGGRY YGDMDRLVAL RKGLGTWSSW VLRYINSPLT RVFFLSVSPT HYNPNEWTSR SKTSTITQGG
301: KSCYGQTTPF SGTTYPTSSY VNQKKVIDDV VKEMKSHVSL MDITMLSALR VDGHPSIYSG DLNPSLKRNP DRSSDCSHWC LPGLPDTWNQ LFYAALLY
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)