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AT2G29990.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
mitochondrion 1.000
ASURE: mitochondrion
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:23841539 (2013): mitochondrion mitochondrial envelope
  • PMID:23841539 (2013): peroxisome mitochondrial envelope
  • PMID:18703057 (2008): mitochondrion
  • PMID:18703057 (2008): peroxisome
  • PMID:18318686 (2008): mitochondrion
  • PMID:12972666 (2003): mitochondrion
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : alternative NAD(P)H dehydrogenase 2
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
alternative NAD(P)H dehydrogenase 2 (NDA2); FUNCTIONS IN: NADH dehydrogenase activity, oxidoreductase activity, FAD binding; INVOLVED IN: oxidation reduction; LOCATED IN: intrinsic to mitochondrial inner membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: FAD-dependent pyridine nucleotide-disulphide oxidoreductase (InterPro:IPR013027), Pyridine nucleotide-disulphide oxidoreductase, NAD-binding region (InterPro:IPR001327); BEST Arabidopsis thaliana protein match is: alternative NAD(P)H dehydrogenase 1 (TAIR:AT1G07180.1); Has 11797 Blast hits to 11597 proteins in 2273 species: Archae - 301; Bacteria - 9312; Metazoa - 49; Fungi - 695; Plants - 411; Viruses - 0; Other Eukaryotes - 1029 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT2G29990-MONOMEREC:1.6.5.9eggNOG:COG1252eggNOG:KOG2495EMBL:AC004680EMBL:CP002685EnsemblPlants:AT2G29990
EnsemblPlants:AT2G29990.1entrez:817549Gene3D:3.50.50.60GeneID:817549Genevisible:O80874GO:GO:0003959GO:GO:0005739
GO:GO:0005759GO:GO:0005777GO:GO:0031304GO:GO:0055114Gramene:AT2G29990.1hmmpanther:PTHR22912HOGENOM:HOG000182501
InParanoid:O80874InterPro:IPR023753KEGG:ath:AT2G29990KO:K17871OMA:VKQRYSHPaxDb:O80874Pfam:O80874
Pfam:PF07992PhylomeDB:O80874PIR:T02486PRIDE:O80874PRO:PR:O80874ProteinModelPortal:O80874Proteomes:UP000006548
RefSeq:NP_180560.1SMR:O80874STRING:3702.AT2G29990.1SUPFAM:SSF51905SwissPalm:O80874TAIR:AT2G29990tair10-symbols:NDA2
UniGene:At.38412UniProt:O80874
Coordinates (TAIR10) chr2:-:12793562..12795913
Molecular Weight (calculated) 56506.30 Da
IEP (calculated) 9.69
GRAVY (calculated) -0.11
Length 508 amino acids
Sequence (TAIR10)
(BLAST)
001: MFMIKNLTRI SPNTSSIITR FRNSGSSSLS YTLASRFCTA QETQIQSPAK IPNDVDRSQY SGLPPTREGE KPRVVVLGSG WAGCRLMKGI DTNLYDVVCV
101: SPRNHMVFTP LLASTCVGTL EFRSVAEPIS RIQPAISREP GSFFFLANCS RLDADAHEVH CETLTDGLNT LKPWKFKIAY DKLVIASGAE ASTFGIHGVM
201: ENAIFLREVH HAQEIRRKLL LNLMLSDTPG ISKEEKRRLL HCVVVGGGPT GVEFSGELSD FIMKDVRQRY AHVKDDIHVT LIEARDILSS FDDRLRRYAI
301: KQLNKSGVRF VRGIVKDVQS QKLILDDGTE VPYGLLVWST GVGPSPFVRS LGLPKDPTGR IGIDEWMRVP SVQDVFAIGD CSGYLETTGK PTLPALAQVA
401: EREGKYLANL LNAIGKGNGG RANSAKEIEL GVPFVYKHLG SMATIGRYKA LVDLRESKDA KGISMTGFVS WFIWRSAYLT RVISWRNRFY VAINWFTTFV
501: FGRDISRI
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)