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AT2G29980.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plasma membrane 0.775
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : fatty acid desaturase 3
Curator
Summary (TAIR10)
Endoplasmic reticulum enzyme responsible for the synthesis of 18:3 fatty acids from phospholipids. Uses cytochrome b5 as electron donor.
Computational
Description (TAIR10)
fatty acid desaturase 3 (FAD3); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3474 (InterPro:IPR021863), Fatty acid desaturase, type 1 (InterPro:IPR005804); BEST Arabidopsis thaliana protein match is: fatty acid desaturase 8 (TAIR:AT5G05580.1); Has 2578 Blast hits to 2575 proteins in 659 species: Archae - 0; Bacteria - 965; Metazoa - 19; Fungi - 262; Plants - 918; Viruses - 0; Other Eukaryotes - 414 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT2G29980-MONOMERBioCyc:ARA:GQT-2190-MONOMERBioCyc:MetaCyc:AT2G29980-MONOMERBioGrid:2898
EC:1.14.19.25eggNOG:COG3239eggNOG:ENOG410JADMEMBL:AC004680
EMBL:AK230026EMBL:AY063966EMBL:AY096462EMBL:CP002685
EMBL:D17579EMBL:D26508EMBL:L22931EnsemblPlants:AT2G29980
EnsemblPlants:AT2G29980.1entrez:817548ExpressionAtlas:P48623GeneID:817548
Genevisible:P48623GO:GO:0005783GO:GO:0005789GO:GO:0006636
GO:GO:0016021GO:GO:0016717GO:GO:0042389GO:GO:0080167
gramene_plant_reactome:1119300gramene_plant_reactome:6873429gramene_plant_reactome:6873557gramene_plant_reactome:6873822
gramene_plant_reactome:6873930gramene_plant_reactome:6874328gramene_plant_reactome:6874888gramene_plant_reactome:6875278
gramene_plant_reactome:6875307gramene_plant_reactome:6875442gramene_plant_reactome:6875540gramene_plant_reactome:6875561
gramene_plant_reactome:6875842gramene_plant_reactome:6876562gramene_plant_reactome:6876598gramene_plant_reactome:6876674
gramene_plant_reactome:6876741gramene_plant_reactome:6876899hmmpanther:PTHR32100hmmpanther:PTHR32100:SF17
HOGENOM:HOG000201904InParanoid:P48623IntAct:P48623InterPro:IPR005804
InterPro:IPR021863KEGG:ath:AT2G29980KO:K10257OMA:FNPYSSL
PaxDb:P48623Pfam:P48623Pfam:PF00487Pfam:PF11960
PhylomeDB:P48623PIR:JQ2335PRO:PR:P48623ProteinModelPortal:P48623
Proteomes:UP000006548RefSeq:NP_180559.1STRING:3702.AT2G29980.1TAIR:AT2G29980
tair10-symbols:FAD3TMHMM:TMhelixUniGene:At.271UniPathway:UPA00658
UniProt:P48623
Coordinates (TAIR10) chr2:-:12781787..12784946
Molecular Weight (calculated) 44079.00 Da
IEP (calculated) 8.53
GRAVY (calculated) -0.09
Length 386 amino acids
Sequence (TAIR10)
(BLAST)
001: MVVAMDQRTN VNGDPGAGDR KKEERFDPSA QPPFKIGDIR AAIPKHCWVK SPLRSMSYVV RDIIAVAALA IAAVYVDSWF LWPLYWAAQG TLFWAIFVLG
101: HDCGHGSFSD IPLLNSVVGH ILHSFILVPY HGWRISHRTH HQNHGHVEND ESWVPLPERV YKKLPHSTRM LRYTVPLPML AYPLYLCYRS PGKEGSHFNP
201: YSSLFAPSER KLIATSTTCW SIMFVSLIAL SFVFGPLAVL KVYGVPYIIF VMWLDAVTYL HHHGHDEKLP WYRGKEWSYL RGGLTTIDRD YGIFNNIHHD
301: IGTHVIHHLF PQIPHYHLVD ATKAAKHVLG RYYREPKTSG AIPIHLVESL VASIKKDHYV SDTGDIVFYE TDPDLYVYAS DKSKIN
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)