AT2G29970.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein; BEST Arabidopsis thaliana protein match is: Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (TAIR:AT1G07200.2); Has 10913 Blast hits to 10488 proteins in 2533 species: Archae - 15; Bacteria - 9122; Metazoa - 6; Fungi - 149; Plants - 525; Viruses - 0; Other Eukaryotes - 1096 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr2:+:12776601..12779784 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 111930.00 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 7.17 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.34 | ||||||||||||||||||||||||||||||||||||||||
| Length | 1002 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MPTPVTTARQ CLTEETARAL DDAVSVARRR SHAQTTSLHA VSGLLTMPSS ILREVCISRA AHNTPYSSRL QFRALELCVG VSLDRLPSSK STPTTTVEED 0101: PPVSNSLMAA IKRSQATQRR HPETYHLHQI HGNNNTETTS VLKVELKYFI LSILDDPIVS RVFGEAGFRS TDIKLDVLHP PVTSQFSSRF TSRSRIPPLF 0201: LCNLPESDSG RVRFGFPFGD LDENCRRIGE VLARKDKKNP LLVGVCGVEA LKTFTDSINR GKFGFLPLEI SGLSVVSIKI SEVLVDGSRI DIKFDDLGRL 0301: KSGMVLNLGE LKVLASDVFS VDVIEKFVLK LADLLKLHRE KLWFIGSVSS NETYLKLIER FPTIDKDWNL HLLPITSSSQ GLYPKSSLMG SFVPFGGFFS 0401: STSDFRIPSS SSMNQTLPRC HLCNEKYEQE VTAFAKSGSM IDDQCSEKLP SWLRNVEHEH EKGNLGKVKD DPNVLASRIP ALQKKWDDIC QRIHQTPAFP 0501: KLSFQPVRPQ FPLQLGSSSQ TKMSLGSPTE KIVCTRTSES FQGMVALPQN PPHQPGLSVK ISKPKHTEDL SSSTTNSPLS FVTTDLGLGT IYASKNQEPS 0601: TPVSVERRDF EVIKEKQLLS ASRYCKDFKS LRELLSRKVG FQNEAVNAIS EIVCGYRDES RRRNNHVATT SNVWLALLGP DKAGKKKVAL ALAEVFCGGQ 0701: DNFICVDFKS QDSLDDRFRG KTVVDYIAGE VARRADSVVF IENVEKAEFP DQIRLSEAMR TGKLRDSHGR EISMKNVIVV ATISGSDKAS DCHVLEEPVK 0801: YSEERVLNAK NWTLQIKLAD TSNVNKNGPN KRRQEEAETE VTELRALKSQ RSFLDLNLPV DEIEANEDEA YTMSENTEAW LEDFVEQVDG KVTFKLIDFD 0901: ELAKNIKRNI LSLFHLSFGP ETHLEIENDV ILKILAALRW SSDEEKTFDQ WLQTVLAPSF AKARQKCVPA APFSVKLVAS RESPAEEETT GIQQFPARVE 1001: VI |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)