suba logo
AT2G29960.1
Subcellular Consensus
(Prediction and Experimental)

min: heatmap :max

.
SUBAcon:
endoplasmic reticulum 1.000
ASURE: endoplasmic reticulum
What is SUBAcon?
What is ASURE?
SUBAcon computations
Predictors External Curations
AmiGO : cytosol 10715321
AmiGO : cytosol 18203920
AmiGO : endoplasmic reticulum 16618929
AmiGO : endoplasmic reticulum 18203920
AmiGO : golgi 18203920
SwissProt : plasma membrane 16381842
SwissProt : cytosol 16381842
SwissProt : endoplasmic reticulum 16381842
TAIR : cytosol 18203920
TAIR : golgi 18203920
TAIR : endoplasmic reticulum 18203920
TAIR : cytosol 10715321
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:10189705 (1999): endoplasmic reticulum
  • PMID:26781341 (2016): plasma membrane
  • PMID:25641898 (2015): plasma membrane
  • PMID:22923678 (2012): endoplasmic reticulum
  • PMID:16618929 (2006): endoplasmic reticulum
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : cyclophilin 5
Curator
Summary (TAIR10)
encodes a cyclophilin protein that exhibits peptidylprolyl cis/trans-isomerase and protein refolding activities that were sensitive to cyclosporin A. The protein interacts with GNOM in vitro and is localized to both the cytosolic and membrane fractions. The gene is expressed in the developing embryo.
Computational
Description (TAIR10)
cyclophilin 5 (CYP5); FUNCTIONS IN: peptidyl-prolyl cis-trans isomerase activity; INVOLVED IN: protein folding; LOCATED IN: cytosol, Golgi stack, endoplasmic reticulum, membrane fraction, multivesicular body; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cyclophilin-like (InterPro:IPR015891), Peptidyl-prolyl cis-trans isomerase, cyclophilin-type (InterPro:IPR002130), Peptidyl-prolyl cis-trans isomerase, cyclophilin-type, conserved site (InterPro:IPR020892); BEST Arabidopsis thaliana protein match is: rotamase CYP 7 (TAIR:AT5G58710.1); Has 16420 Blast hits to 16390 proteins in 2652 species: Archae - 108; Bacteria - 6810; Metazoa - 2915; Fungi - 1388; Plants - 1273; Viruses - 4; Other Eukaryotes - 3922 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT2G29960-MONOMERBioCyc:ARA:GQT-687-MONOMERBioGrid:2896EC:5.2.1.8eggNOG:COG0652eggNOG:KOG0865EMBL:AC004680
EMBL:AF020433EMBL:AY054593EMBL:AY085875EMBL:BT000068EMBL:CP002685EnsemblPlants:AT2G29960EnsemblPlants:AT2G29960.1
EnsemblPlants:AT2G29960.2entrez:817546ExpressionAtlas:Q8LDP4Gene3D:2.40.100.10GeneID:817546Genevisible:Q8LDP4GO:GO:0003755
GO:GO:0005576GO:GO:0005771GO:GO:0005783GO:GO:0005795GO:GO:0005829GO:GO:0006457GO:GO:0016020
GO:GO:0042277hmmpanther:PTHR11071hmmpanther:PTHR11071:SF291HOGENOM:HOG000065981InParanoid:Q8LDP4IntAct:Q8LDP4InterPro:IPR002130
InterPro:IPR020892InterPro:IPR024936InterPro:IPR029000iPTMnet:Q8LDP4KEGG:ath:AT2G29960KO:K01802OMA:EGKQSGT
PANTHER:PTHR11071PaxDb:Q8LDP4Pfam:PF00160Pfam:Q8LDP4Pfscan:PS50072PhylomeDB:Q8LDP4PIR:T02489
PIR:T50837PIRSF:PIRSF001467PRIDE:Q8LDP4PRINTS:PR00153PRO:PR:Q8LDP4ProMEX:Q8LDP4PROSITE:PS00170
PROSITE:PS50072ProteinModelPortal:Q8LDP4Proteomes:UP000006548RefSeq:NP_001077978.1RefSeq:NP_180557.1scanprosite:PS00170SMR:Q8LDP4
STRING:3702.AT2G29960.1SUPFAM:SSF50891TAIR:AT2G29960tair10-symbols:ATCYP5tair10-symbols:CYP19-4tair10-symbols:CYP5UniGene:At.26460
UniProt:Q8LDP4
Coordinates (TAIR10) chr2:-:12769183..12770528
Molecular Weight (calculated) 21535.00 Da
IEP (calculated) 9.60
GRAVY (calculated) -0.10
Length 201 amino acids
Sequence (TAIR10)
(BLAST)
001: MAKASFILLG TLFLFGAIAS IQAKEDLKEV THKVYFDVEI DGKSAGRVVI GLFGKAVPKT AENFRALCTG EKGVGKSGKP LHYKGSKFHR IIPSFMIQGG
101: DFTHGNGMGG ESIYGQKFAD ENFKLKHTGP GVLSMANSGE DTNGSQFFIT TVTTSWLDGR HVVFGKVVQG MDVVYKIEAE GKQSGTPKSK VVIADSGELP
201: L
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)