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AT2G29900.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plasma membrane 0.684
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Presenilin-2
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Presenilin-2 (PS2); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: intracellular signaling pathway; LOCATED IN: integral to membrane, membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase A22, presenilin signal peptide (InterPro:IPR006639), Peptidase A22A, presenilin (InterPro:IPR001108); BEST Arabidopsis thaliana protein match is: Presenilin-1 (TAIR:AT1G08700.1); Has 475 Blast hits to 452 proteins in 108 species: Archae - 2; Bacteria - 0; Metazoa - 334; Fungi - 0; Plants - 63; Viruses - 0; Other Eukaryotes - 76 (source: NCBI BLink).
Protein Annotations
BioGrid:2890eggNOG:ENOG410XPZDeggNOG:KOG2736EMBL:AC007113EMBL:BT028914EMBL:CP002685EnsemblPlants:AT2G29900
EnsemblPlants:AT2G29900.1entrez:817540GeneID:817540Genevisible:Q9SIK7GO:GO:0000139GO:GO:0004175GO:GO:0004190
GO:GO:0005634GO:GO:0005789GO:GO:0005798GO:GO:0005887GO:GO:0007219GO:GO:0016485GO:GO:0043231
Gramene:AT2G29900.1hmmpanther:PTHR10202HOGENOM:HOG000240228InParanoid:Q9SIK7InterPro:IPR001108InterPro:IPR006639KEGG:ath:AT2G29900
KO:K04505MEROPS:A22.A02OMA:SICMFTVPANTHER:PTHR10202PaxDb:Q9SIK7Pfam:PF01080Pfam:Q9SIK7
PhylomeDB:Q9SIK7PIR:A84702PRIDE:Q9SIK7PRINTS:PR01072PRO:PR:Q9SIK7ProteinModelPortal:Q9SIK7Proteomes:UP000006548
RefSeq:NP_180551.1SMART:SM00730SMR:Q9SIK7STRING:3702.AT2G29900.1TAIR:AT2G29900tair10-symbols:PS2TMHMM:TMhelix
UniGene:At.66277UniProt:Q9SIK7
Coordinates (TAIR10) chr2:+:12749837..12751030
Molecular Weight (calculated) 44014.30 Da
IEP (calculated) 4.59
GRAVY (calculated) 0.74
Length 397 amino acids
Sequence (TAIR10)
(BLAST)
001: MDRNQRPRSI LDSLGEELIA ILTPVSICMF TVVLLVCILN SDPSSSSASF SSIATAAYSE SDSDSSWDKF VGALLNSVVF VAAITVATFV LVLLFYLRCV
101: KFLKFYMGFS AFIVLGNLGG EILVLLIDRF RFPIDSITFL ILLFNFSVVG VFAVFMSKFS ILITQGYLVW IGVLVAYFFT LLPEWTTWVL LVALALYDIA
201: AVLLPVGPLR LLVEMAISRD EDIPALVYEA RPVIRNDSRS VQRRVWREQR SSQNNANRNE VRVVESAEVE EEHVGSSERA EISVPLIDRR PEQAENSETF
301: LEGIGLGSSG AIKLGLGDFI FYSVLVGRAA MYDLMTVYAC YLAIIAGLGI TLMLLSVYQK ALPALPVSIM LGVVFYFLAR LLLEVFVVQC SSNLVMF
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)