AT2G29820.1
Subcellular Consensus
(Prediction and Experimental) min: :max .
SUBAcon:cytosol 0.896 What is SUBAcon? |
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Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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Description (TAIR10) | protein_coding : Galactose oxidase/kelch repeat superfamily protein | ||||||||||||||||||||||||||||||||||||||||
Curator Summary (TAIR10) |
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Computational Description (TAIR10) |
Galactose oxidase/kelch repeat superfamily protein; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), Galactose oxidase/kelch, beta-propeller (InterPro:IPR011043), Kelch repeat type 1 (InterPro:IPR006652), Kelch related (InterPro:IPR013089), Kelch-type beta propeller (InterPro:IPR015915); BEST Arabidopsis thaliana protein match is: Galactose oxidase/kelch repeat superfamily protein (TAIR:AT2G29830.1); Has 2885 Blast hits to 2442 proteins in 138 species: Archae - 8; Bacteria - 155; Metazoa - 1559; Fungi - 15; Plants - 1052; Viruses - 18; Other Eukaryotes - 78 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
Protein Annotations |
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Coordinates (TAIR10) | chr2:-:12728362..12729528 | ||||||||||||||||||||||||||||||||||||||||
Molecular Weight (calculated) | 44144.30 Da | ||||||||||||||||||||||||||||||||||||||||
IEP (calculated) | 6.72 | ||||||||||||||||||||||||||||||||||||||||
GRAVY (calculated) | 0.02 | ||||||||||||||||||||||||||||||||||||||||
Length | 388 amino acids | ||||||||||||||||||||||||||||||||||||||||
Sequence (TAIR10) (BLAST) |
001: MVVLHEILDG PNGDDPNNNP QEGEDNQNEN PQEEVENLRN LLELPEELIE RLIAHIPRCY YPYISLVSRD FRQVITSDKL FRTRSLLGFN EPVLYALIGS 101: TQTPLSWFFL RWSNFPLELH RIRSLPTVLL GAAVVTIGYK MYVMGGTIGL NHHVSTVIVI DCRNHTWNYL PDMKRARYRA AAGEIGGRIY VIGGRKKQDA 201: DWVEVFNATT ESWETVSSVC PNDASANGVF STYVVMQGRI FALDRWGCFA YKPVQGLWQS WGVASELTRF WHPLSSFTVI GELLYTVDLT CSLGHPIVVY 301: YPNESVWRPV MGFHLPILSQ CWSKIANFGG KLVIFCTCLG TFKHILCIVI ALEARQGGHI WGVVESNSRV FRDDMMLPYI RLCQTVTF |
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See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)