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AT2G29760.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plastid 1.000
ASURE: plastid
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
FP Images

Arabidopsis cell culture (plastidal marker)

At2g29760-GFP
(full-length)
plastidal marker-RFPoverlay

Images by Sandra Tanz

Arabidopsis cell culture (plastidal marker)

At2g29760-GFP (AA 1-100)plastidal marker-RFPoverlay

Images by Sandra Tanz
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Tetratricopeptide repeat (TPR)-like superfamily protein
Curator
Summary (TAIR10)
Encodes a chloroplast RNA editing factor.
Computational
Description (TAIR10)
ORGANELLE TRANSCRIPT PROCESSING 81 (OTP81); CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT1G08070.1); Has 39055 Blast hits to 14294 proteins in 286 species: Archae - 1; Bacteria - 14; Metazoa - 160; Fungi - 158; Plants - 37962; Viruses - 2; Other Eukaryotes - 758 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410Z7Z7eggNOG:KOG4197EMBL:AC005496EMBL:AY500319EMBL:CP002685EnsemblPlants:AT2G29760EnsemblPlants:AT2G29760.1
entrez:817526Gene3D:1.25.40.10GeneID:817526Genevisible:O82380GO:GO:0008270GO:GO:0009507GO:GO:0031425
Gramene:AT2G29760.1hmmpanther:PTHR24015hmmpanther:PTHR24015:SF558HOGENOM:HOG000237569InParanoid:O82380InterPro:IPR002885InterPro:IPR011990
InterPro:IPR032867KEGG:ath:AT2G29760OMA:DLEFGRWPaxDb:O82380Pfam:O82380Pfam:PF01535Pfam:PF13041
Pfam:PF14432Pfscan:PS51375PhylomeDB:O82380PIR:C84700PRIDE:O82380PRO:PR:O82380PROSITE:PS51375
ProteinModelPortal:O82380Proteomes:UP000006548RefSeq:NP_180537.1SMR:O82380STRING:3702.AT2G29760.1SUPFAM:SSF48452TAIR:AT2G29760
tair10-symbols:OTP81TIGRfam:TIGR00756TIGRFAMs:TIGR00756UniGene:At.38446UniGene:At.49361UniProt:O82380
Coordinates (TAIR10) chr2:+:12712884..12715100
Molecular Weight (calculated) 82790.60 Da
IEP (calculated) 6.83
GRAVY (calculated) -0.16
Length 738 amino acids
Sequence (TAIR10)
(BLAST)
001: MAIFSTAQPL SLPRHPNFSN PNQPTTNNER SRHISLIERC VSLRQLKQTH GHMIRTGTFS DPYSASKLFA MAALSSFASL EYARKVFDEI PKPNSFAWNT
101: LIRAYASGPD PVLSIWAFLD MVSESQCYPN KYTFPFLIKA AAEVSSLSLG QSLHGMAVKS AVGSDVFVAN SLIHCYFSCG DLDSACKVFT TIKEKDVVSW
201: NSMINGFVQK GSPDKALELF KKMESEDVKA SHVTMVGVLS ACAKIRNLEF GRQVCSYIEE NRVNVNLTLA NAMLDMYTKC GSIEDAKRLF DAMEEKDNVT
301: WTTMLDGYAI SEDYEAAREV LNSMPQKDIV AWNALISAYE QNGKPNEALI VFHELQLQKN MKLNQITLVS TLSACAQVGA LELGRWIHSY IKKHGIRMNF
401: HVTSALIHMY SKCGDLEKSR EVFNSVEKRD VFVWSAMIGG LAMHGCGNEA VDMFYKMQEA NVKPNGVTFT NVFCACSHTG LVDEAESLFH QMESNYGIVP
501: EEKHYACIVD VLGRSGYLEK AVKFIEAMPI PPSTSVWGAL LGACKIHANL NLAEMACTRL LELEPRNDGA HVLLSNIYAK LGKWENVSEL RKHMRVTGLK
601: KEPGCSSIEI DGMIHEFLSG DNAHPMSEKV YGKLHEVMEK LKSNGYEPEI SQVLQIIEEE EMKEQSLNLH SEKLAICYGL ISTEAPKVIR VIKNLRVCGD
701: CHSVAKLISQ LYDREIIVRD RYRFHHFRNG QCSCNDFW
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)