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AT2G29660.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plasma membrane 0.523
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : zinc finger (C2H2 type) family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
zinc finger (C2H2 type) family protein; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Zinc finger, C2H2-type (InterPro:IPR007087); BEST Arabidopsis thaliana protein match is: zinc finger protein-related (TAIR:AT5G54630.1); Has 407 Blast hits to 407 proteins in 27 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 28; Plants - 376; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IK5FeggNOG:ENOG410YA8BEMBL:AC005496EMBL:AY084379EMBL:AY120775EMBL:BT008448EMBL:CP002685
EnsemblPlants:AT2G29660EnsemblPlants:AT2G29660.1entrez:817516Gene3D:3.90.228.10GeneID:817516GO:GO:0003700GO:GO:0003950
GO:GO:0006355GO:GO:0016021GO:GO:0031225GO:GO:0046872Gramene:AT2G29660.1hmmpanther:PTHR31681hmmpanther:PTHR31681:SF4
HOGENOM:HOG000239323InterPro:IPR007087InterPro:IPR012317KEGG:ath:AT2G29660OMA:CEMEDEEPfscan:PS50157Pfscan:PS51257
PhylomeDB:O82389PIR:A84699PROSITE:PS00028PROSITE:PS50157Proteomes:UP000006548RefSeq:NP_565684.1scanprosite:PS00028
SUPFAM:SSF56399TAIR:AT2G29660TMHMM:TMhelixUniGene:At.43819UniProt:O82389
Coordinates (TAIR10) chr2:+:12679346..12680467
Molecular Weight (calculated) 41606.60 Da
IEP (calculated) 8.48
GRAVY (calculated) -0.27
Length 373 amino acids
Sequence (TAIR10)
(BLAST)
001: MAARKLGSLL RQYFFSLCFL FLGCFFFPKD ADYKQKRRKK KLRRVSSSSG SSLSSSWTYL KRVFLSTTRI SKSRNQTHPN VTLTSARSSQ NSLVTLVQPD
101: TTNQPDPETR IHQQTEFEIS SSDEIFPCNS CGEIFPKINL LENHIAIKHA VSELIAGESS TNIVKIIFKS GWPEQGNYKS PVINRILKIH NSSKILTRFE
201: EYREFVKAKA ARSNGGGRRW DDERCVADGN ELLRFYCSTF MCDLGQNGKS NLCGHQYCSI CGIIGSGFSP KLDGIATLAT GWRGHVAVPE EVEEEFGFMN
301: VKRAMLVCRV VAGRVGCDLI DDDDVDKSDG GGYDSLVGQS GNKSGALLRI DDDELLVFNP RAVLPCFVIV YTV
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)