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AT2G29540.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:24134884 (2013): cytoskeleton microtubules
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : RNApolymerase 14 kDa subunit
Curator
Summary (TAIR10)
RNA polymerase I(A) and III(C) 14 kDa subunit
Computational
Description (TAIR10)
RNApolymerase 14 kDa subunit (RPC14); FUNCTIONS IN: DNA-directed RNA polymerase activity, protein dimerization activity, DNA binding; INVOLVED IN: tRNA transcription; LOCATED IN: DNA-directed RNA polymerase III complex; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: DNA-directed RNA polymerase Rpb11, 13-16kDa subunit, conserved site (InterPro:IPR008193), DNA-directed RNA polymerase, dimerisation (InterPro:IPR011261), DNA-directed RNA polymerase, RBP11-like (InterPro:IPR009025); BEST Arabidopsis thaliana protein match is: DNA-directed RNA polymerase, RBP11-like (TAIR:AT3G52090.1); Has 889 Blast hits to 889 proteins in 232 species: Archae - 23; Bacteria - 0; Metazoa - 328; Fungi - 301; Plants - 115; Viruses - 0; Other Eukaryotes - 122 (source: NCBI BLink).
Protein Annotations
eggNOG:COG1761eggNOG:KOG3438EMBL:AC004561EMBL:AK118945EMBL:BT004959EMBL:CP002685EMBL:U35049
EMBL:U35050EnsemblPlants:AT2G29540EnsemblPlants:AT2G29540.1EnsemblPlants:AT2G29540.2entrez:817503ExpressionAtlas:Q42483GeneID:817503
GO:GO:0003677GO:GO:0003899GO:GO:0006351Gramene:AT2G29540.1Gramene:AT2G29540.2hmmpanther:PTHR13946hmmpanther:PTHR13946:SF28
HOGENOM:HOG000179862IntAct:Q42483InterPro:IPR008193InterPro:IPR009025KEGG:00230+2.7.7.6KEGG:00240+2.7.7.6KEGG:ath:AT2G29540
KO:K03020ncoils:CoilOMA:EHGSFTNPfam:PF13656PhylomeDB:Q42483PIR:JC4847PROSITE:PS01154
Proteomes:UP000006548RefSeq:NP_001031443.1RefSeq:NP_180514.1scanprosite:PS01154SMR:Q42483STRING:3702.AT2G29540.3SUPFAM:SSF55257
TAIR:AT2G29540tair10-symbols:ATRPAC14tair10-symbols:ATRPC14tair10-symbols:RPC14UniGene:At.10807UniProt:Q42483
Coordinates (TAIR10) chr2:+:12642727..12643828
Molecular Weight (calculated) 14079.40 Da
IEP (calculated) 4.85
GRAVY (calculated) -0.81
Length 122 amino acids
Sequence (TAIR10)
(BLAST)
001: MEHGSFTNVS HASFTLSEED HTLANAVRFV LNQDPRVTVA AYTIPHPSLE QVNIRVQTTG DPAREVFKDA CQELMQMNRH VRSVFDKAVA EYKDEQKRKE
101: EAEEEELKRQ RDLFGSMDIE NN
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)