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AT2G29510.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:24134884 (2013): cytoskeleton microtubules
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Protein of unknown function (DUF3527)
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Protein of unknown function (DUF3527); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3527 (InterPro:IPR021916); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF3527) (TAIR:AT5G59020.1); Has 3861 Blast hits to 705 proteins in 135 species: Archae - 0; Bacteria - 66; Metazoa - 411; Fungi - 77; Plants - 149; Viruses - 10; Other Eukaryotes - 3148 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IV8CeggNOG:ENOG410ZKFPEMBL:AC004561EMBL:AY093105EMBL:BT008800EMBL:CP002685EnsemblPlants:AT2G29510
EnsemblPlants:AT2G29510.1entrez:817500GeneID:817500GO:GO:0009506Gramene:AT2G29510.1hmmpanther:PTHR31390hmmpanther:PTHR31390:SF4
HOGENOM:HOG000090355InterPro:IPR021916KEGG:ath:AT2G29510ncoils:CoilOMA:YAVEYNTPfam:PF12043PhylomeDB:Q9ZW32
PIR:C84697Proteomes:UP000006548RefSeq:NP_180512.1TAIR:AT2G29510UniGene:At.12691UniProt:Q9ZW32
Coordinates (TAIR10) chr2:+:12635231..12637838
Molecular Weight (calculated) 93323.00 Da
IEP (calculated) 10.29
GRAVY (calculated) -0.76
Length 839 amino acids
Sequence (TAIR10)
(BLAST)
001: MECRLELKKG SCDRPPFVAA EKKVLTKESS KAFTPDKFRD DKRGLSYSDF HREITKKVED VCPKRLENRL KSRIGRTASG ERDLVKYKSY VPSYIKKCDK
101: VEDKSVKAGG VIGSQELRNM QGIDKLMDKH TRSSLSNTST SSSLWTDESS TDSSRGLCAS PFRKKINHPP LQYYLMSSKP GDNFQDLEPP QDNGDTSHSH
201: RRDGQFHQTP RATAVQQNEK KDTDVKIVPK TRTLFSPSKP DSPSCTRIIS KNLAEDFKKK GEKLEERIRN PRVHDLFGKE KPAAVFVPGI VSQKQFIGLS
301: KFYDSKVLLA ERLAESNRKG FTERLAHGKT AVLDSDVGPF RREADGGSKP FLKRISFLSE RSCSAPRSRK AESSPSRSRT LDRRSTETLP KQSDQKPAKV
401: LSERARSISP FRRLSFSIGK SSKNSNTEDA KTPPHLSTAL ISSRAGLDNP SASSFSDSSS FDKTSAANRG RSSPLRRLLD PLIKPKSSHS CRSPEPSLKE
501: APSSQPSSSS FLSRNGKSST VQALFRVTSK NDQPLFTFAV EKEQSITAAT IRKQTLPEKE DYGHKYTFFT VQEVQKKNAK WMNNSRKVQS QEYTSNIVAQ
601: MRVSDPKPLF LAGERSAENL LTREFVLVAS ESQRTNELAA MVIKIPKLTD TTSSTTLGDY FAEVNATVVL PSGVHSLPHK GGPSSLIQRW KSDGSCDCGG
701: WDTGCNLRIL TNQHNKPINP SPTTSDAFKL FFQGGVQENN NQPYLSFTTY REGVYAVEYN TSLSLLQAFS ICIAVNEGRN PLIKTTVEPN TSRVEKKAYG
801: GEMSSIQNEN LKSFSGPIEA EAPARYLSHH PPLSPVGRV
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)