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AT2G29400.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
cytosol 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : type one protein phosphatase 1
Curator
Summary (TAIR10)
Type 1 protein phosphatase, expressed in roots, rosettes and flowers
Computational
Description (TAIR10)
type one protein phosphatase 1 (TOPP1); CONTAINS InterPro DOMAIN/s: Metallophosphoesterase (InterPro:IPR004843), Serine/threonine-specific protein phosphatase/bis(5-nucleosyl)-tetraphosphatase (InterPro:IPR006186); BEST Arabidopsis thaliana protein match is: type one serine/threonine protein phosphatase 2 (TAIR:AT5G59160.3); Has 7268 Blast hits to 7072 proteins in 663 species: Archae - 78; Bacteria - 610; Metazoa - 2414; Fungi - 1413; Plants - 987; Viruses - 22; Other Eukaryotes - 1744 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT2G29400-MONOMERBioGrid:2839EC:3.1.3.16eggNOG:ENOG410IN84eggNOG:ENOG410XXN0EMBL:AC004561EMBL:AY080871
EMBL:AY142593EMBL:CP002685EMBL:M93408EMBL:X64328EnsemblPlants:AT2G29400EnsemblPlants:AT2G29400.1entrez:817489
Gene3D:3.60.21.10GeneID:817489Genevisible:P30366GO:GO:0000164GO:GO:0004722GO:GO:0006470GO:GO:0046872
Gramene:AT2G29400.1hmmpanther:PTHR11668hmmpanther:PTHR11668:SF259HOGENOM:HOG000172697InParanoid:P30366IntAct:P30366InterPro:IPR004843
InterPro:IPR006186InterPro:IPR029052InterPro:IPR031675KEGG:ath:AT2G29400KO:K06269OMA:QGLETICPaxDb:P30366
Pfam:P30366Pfam:PF00149Pfam:PF16891PhylomeDB:P30366PIR:S20882PRIDE:P30366PRINTS:PR00114
PRO:PR:P30366PROSITE:PS00125ProteinModelPortal:P30366Proteomes:UP000006548RefSeq:NP_180501.1scanprosite:PS00125SMART:SM00156
SMR:P30366STRING:3702.AT2G29400.1SUPFAM:SSF56300TAIR:AT2G29400tair10-symbols:PP1-ATtair10-symbols:TOPP1UniGene:At.282
UniProt:P30366
Coordinates (TAIR10) chr2:-:12613789..12615283
Molecular Weight (calculated) 36280.60 Da
IEP (calculated) 4.78
GRAVY (calculated) -0.23
Length 318 amino acids
Sequence (TAIR10)
(BLAST)
001: MAEKPAQEQE QKRAMEPAVL DDIIRRLVEF RNTRPGSGKQ VHLSEGEIRQ LCAVSKEIFL QQPNLLELEA PIKICGDIHG QYSDLLRLFE YGGFPPEANY
101: LFLGDYVDRG KQSLETICLL LAYKIKYPEN FFLLRGNHES ASINRIYGFY DECKRRFNVR LWKIFTDCFN CLPVAALIDD RILCMHGGIS PELKSLDQIR
201: NIARPMDIPE SGLVCDLLWS DPSGDVGWGM NDRGVSYTFG ADKVAEFLEK HDMDLICRAH QVVEDGYEFF AERQLVTVFS APNYCGEFDN AGAMMSIDES
301: LMCSFQILKP SEKKSPFL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)