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AT2G29390.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
vacuole 0.583
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : sterol 4-alpha-methyl-oxidase 2-2
Curator
Summary (TAIR10)
Encodes a sterol 4-alpha-methyl-oxidase, specifically a 4-alpha-methyl-delta-7-sterol-4alpha-methyl-oxidase.
Computational
Description (TAIR10)
sterol 4-alpha-methyl-oxidase 2-2 (SMO2-2); CONTAINS InterPro DOMAIN/s: Fatty acid hydroxylase (InterPro:IPR006694); BEST Arabidopsis thaliana protein match is: sterol 4-alpha-methyl-oxidase 2-1 (TAIR:AT1G07420.1); Has 2545 Blast hits to 2540 proteins in 425 species: Archae - 0; Bacteria - 475; Metazoa - 426; Fungi - 627; Plants - 480; Viruses - 3; Other Eukaryotes - 534 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT2G29390-MONOMERBioGrid:2838BRENDA:1.14.13.72EC:1.14.13.72
eggNOG:COG3000eggNOG:KOG0873EMBL:AC004561EMBL:AF222719
EMBL:AF327853EMBL:AY086287EMBL:BT002780EMBL:BT005125
EMBL:CP002685EnsemblPlants:AT2G29390EnsemblPlants:AT2G29390.1entrez:817488
GeneID:817488Genevisible:Q9ZW22GO:GO:0000254GO:GO:0005506
GO:GO:0005789GO:GO:0006633GO:GO:0016020GO:GO:0016021
GO:GO:0016126GO:GO:0080065gramene_pathway:1.14.13.72gramene_pathway:PWY66-341
gramene_plant_reactome:1119286gramene_plant_reactome:1119439gramene_plant_reactome:6873627gramene_plant_reactome:6873666
gramene_plant_reactome:6873792gramene_plant_reactome:6873834gramene_plant_reactome:6875077gramene_plant_reactome:6875120
gramene_plant_reactome:6876022gramene_plant_reactome:6876210gramene_plant_reactome:6876218gramene_plant_reactome:6876434
gramene_plant_reactome:6876572gramene_plant_reactome:6876858hmmpanther:PTHR11863hmmpanther:PTHR11863:SF27
HOGENOM:HOG000162289InParanoid:Q9ZW22IntAct:Q9ZW22InterPro:IPR006694
KEGG:ath:AT2G29390KO:K14424OMA:PYIFLERPaxDb:Q9ZW22
Pfam:PF04116Pfam:Q9ZW22PhylomeDB:Q9ZW22PIR:G84695
PRO:PR:Q9ZW22Proteomes:UP000006548Reactome:R-ATH-191273RefSeq:NP_001077974.1
RefSeq:NP_001077975.1RefSeq:NP_565681.1RefSeq:NP_850133.1RefSeq:NP_973559.1
STRING:3702.AT2G29390.1TAIR:AT2G29390tair10-symbols:ATSMO2tair10-symbols:SMO2-2
TMHMM:TMhelixUniGene:At.27345UniProt:Q9ZW22
Coordinates (TAIR10) chr2:-:12610758..12612799
Molecular Weight (calculated) 31650.40 Da
IEP (calculated) 7.45
GRAVY (calculated) 0.19
Length 272 amino acids
Sequence (TAIR10)
(BLAST)
001: MDSLVESGWK YLVTHFSDFQ LACIGSFILH ESVFFLSGLP YIFLERTGFL SNYKIQTKSN TPEAQGKCIA RLLLYHCCVN LPLMMASYPV FRFMGMESSF
101: PLPSWKVVSA QILFYFIIED FVFYWGHRIL HTKWLYKNVH SVHHEYATPF GLTSEYAHPA EILFLGFATI VGPALTGPHL ITLWLWMMLR VIETVEAHCG
201: YHFPWSPSNF LPLYGGSLIL MWESFAYSAD FHDYHHRLLY TKSGNYSSTF VYMDWIFGTD KGYRKLKALK ET
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)