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AT2G29340.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
cytosol 0.983
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : NAD-dependent epimerase/dehydratase family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
NAD-dependent epimerase/dehydratase family protein; FUNCTIONS IN: oxidoreductase activity, binding, catalytic activity; INVOLVED IN: oxidation reduction, metabolic process; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: NAD(P)-binding domain (InterPro:IPR016040), Glucose/ribitol dehydrogenase (InterPro:IPR002347), Short-chain dehydrogenase/reductase SDR (InterPro:IPR002198); BEST Arabidopsis thaliana protein match is: NAD(P)-binding Rossmann-fold superfamily protein (TAIR:AT2G29320.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:GQT-1167-MONOMERBioCyc:ARA:GQT-2104-MONOMEREC:1.1.1.-eggNOG:COG1028eggNOG:KOG0725EMBL:AC004561EMBL:AK316672
EMBL:AY035093EMBL:CP002685EnsemblPlants:AT2G29340EnsemblPlants:AT2G29340.1EnsemblPlants:AT2G29340.2EnsemblPlants:AT2G29340.3entrez:817483
ExpressionAtlas:F4IKM1Gene3D:3.40.50.720GeneID:817483Genevisible:F4IKM1GO:GO:0016491hmmpanther:PTHR24322hmmpanther:PTHR24322:SF623
InParanoid:F4IKM1IntAct:F4IKM1InterPro:IPR002347InterPro:IPR016040KEGG:ath:AT2G29340KO:K08081OMA:AERHAYY
PANTHER:PTHR24322PaxDb:F4IKM1Pfam:F4IKM1Pfam:PF00106PhylomeDB:F4IKM1PIR:B84695PRIDE:F4IKM1
PRINTS:PR00080PRINTS:PR00081PRO:PR:F4IKM1ProteinModelPortal:F4IKM1Proteomes:UP000006548RefSeq:NP_001118409.1RefSeq:NP_565680.2
RefSeq:NP_850131.1SMR:F4IKM1STRING:3702.AT2G29340.1SUPFAM:SSF51735TAIR:AT2G29340UniGene:At.12679UniProt:F4IKM1
Coordinates (TAIR10) chr2:+:12597131..12599009
Molecular Weight (calculated) 32901.50 Da
IEP (calculated) 5.39
GRAVY (calculated) 0.17
Length 307 amino acids
Sequence (TAIR10)
(BLAST)
001: MDKRWSLKGM TALVTGGASG IGYAIVEELA GFGARIHVCD ISEAKLNQSL SEWEKKGFQV SGSVCDVASR PEREELMQTV SSQFDGKLNI LVSNVGVIRS
101: KPTTEYTEDD FAFHISSNVE AAYHFSQLSH PLLKASGYGS IIFVSSIAGV ISFDAGSIYG LTKGALIQLA KNLACEWAKD GIRANAVAPN VINTPLSQSY
201: LEDVSFKKAL LSRTPLGRVG EPNEVASLVA FLCLPAASYI TGQTICVDGG LTVNGFSYQP EEALLSRTSL RRVGEPNEVS SLVVFLCLPA ASYITGQMVK
301: PFVLMEV
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)