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AT2G29290.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plasma membrane 0.346
golgi 0.335
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : NAD(P)-binding Rossmann-fold superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
NAD(P)-binding Rossmann-fold superfamily protein; FUNCTIONS IN: oxidoreductase activity, binding, catalytic activity; INVOLVED IN: oxidation reduction, metabolic process; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Short-chain dehydrogenase/reductase, conserved site (InterPro:IPR020904), NAD(P)-binding domain (InterPro:IPR016040), Glucose/ribitol dehydrogenase (InterPro:IPR002347), Short-chain dehydrogenase/reductase SDR (InterPro:IPR002198); BEST Arabidopsis thaliana protein match is: senescence-associated gene 13 (TAIR:AT2G29350.1); Has 121057 Blast hits to 120745 proteins in 3594 species: Archae - 991; Bacteria - 79410; Metazoa - 5524; Fungi - 6125; Plants - 2737; Viruses - 5; Other Eukaryotes - 26265 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT2G29290-MONOMERBioCyc:ARA:GQT-704-MONOMEREC:1.1.1.-eggNOG:COG1028eggNOG:KOG0725EMBL:AC004561EMBL:AK175125
EMBL:BT010409EMBL:CP002685EnsemblPlants:AT2G29290EnsemblPlants:AT2G29290.1EnsemblPlants:AT2G29290.2entrez:817478ExpressionAtlas:Q9ZW13
Gene3D:3.40.50.720GeneID:817478Genevisible:Q9ZW13GO:GO:0016491hmmpanther:PTHR24322hmmpanther:PTHR24322:SF641InterPro:IPR002347
InterPro:IPR016040InterPro:IPR020904KEGG:ath:AT2G29290KO:K08081OMA:DHIRINSPANTHER:PTHR24322PaxDb:Q9ZW13
Pfam:PF00106PhylomeDB:Q9ZW13PIR:E84694PRIDE:Q9ZW13PRINTS:PR00080PRINTS:PR00081PRO:PR:Q9ZW13
PROSITE:PS00061ProteinModelPortal:Q9ZW13Proteomes:UP000006548RefSeq:NP_001118408.1RefSeq:NP_180490.2scanprosite:PS00061SMR:Q9ZW13
STRING:3702.AT2G29290.2SUPFAM:SSF51735TAIR:AT2G29290UniGene:At.38495UniProt:F4IKL4
Coordinates (TAIR10) chr2:+:12586509..12587684
Molecular Weight (calculated) 26695.10 Da
IEP (calculated) 4.83
GRAVY (calculated) 0.04
Length 245 amino acids
Sequence (TAIR10)
(BLAST)
001: MESSREAVVE ELSILGARVH TCARDETQLQ ERLREWQEKG FQVTTSICDV SLREQREKLM ETVSSLFQGK LNILVNNVGT LMLKPTTEYT AEEFSFLMAT
101: NLDSAFHISQ LAHPLLKASG SGSIVLMSSI AGVVHVGVGS IYGATKGAMN QLARNLACEW ASDNIRTNAI CPWLITTPLI SDLLSVEEMK KEAEERTPMG
201: RVGEANEVSP LVAFLCLPAA SYITGQVICV DGGLTVNGFS YQPHA
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)