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AT2G29190.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
cytosol 0.500
nucleus 0.500
ASURE: cytosol,nucleus
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : pumilio 2
Curator
Summary (TAIR10)
Encodes a member of the Arabidopsis Pumilio (APUM) proteins containing PUF domain (eight repeats of approximately 36 amino acids each). PUF proteins regulate both mRNA stability and translation through sequence-specific binding to the 3' UTR of target mRNA transcripts.
Computational
Description (TAIR10)
pumilio 2 (PUM2); FUNCTIONS IN: mRNA binding, RNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Nucleic acid binding NABP (InterPro:IPR012940), Pumilio RNA-binding repeat (InterPro:IPR001313), Armadillo-like helical (InterPro:IPR011989), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: pumilio 1 (TAIR:AT2G29200.1); Has 3838 Blast hits to 2002 proteins in 239 species: Archae - 0; Bacteria - 4; Metazoa - 765; Fungi - 1352; Plants - 848; Viruses - 0; Other Eukaryotes - 869 (source: NCBI BLink).
Protein Annotations
eggNOG:COG5099eggNOG:KOG1488EMBL:AC004561EMBL:AK226635EMBL:AY096653EMBL:CP002685EnsemblPlants:AT2G29190
EnsemblPlants:AT2G29190.1EnsemblPlants:AT2G29190.2entrez:817468Gene3D:1.25.10.10GeneID:817468Genevisible:Q9ZW06GO:GO:0003723
GO:GO:0003730GO:GO:0005829GO:GO:0006417Gramene:AT2G29190.1Gramene:AT2G29190.2hmmpanther:PTHR12537hmmpanther:PTHR12537:SF78
HOGENOM:HOG000238460InParanoid:Q9ZW06InterPro:IPR001313InterPro:IPR011989InterPro:IPR012940InterPro:IPR016024InterPro:IPR033133
iPTMnet:Q9ZW06KEGG:ath:AT2G29190KO:K17943OMA:RHNDLNMPaxDb:Q9ZW06Pfam:PF00806Pfam:PF07990
Pfam:Q9ZW06Pfscan:PS50302Pfscan:PS50303PhylomeDB:Q9ZW06PIR:E84693PRIDE:Q9ZW06PRO:PR:Q9ZW06
PROSITE:PS50302PROSITE:PS50303ProteinModelPortal:Q9ZW06Proteomes:UP000006548RefSeq:NP_001189630.1RefSeq:NP_180482.1SMART:SM00025
SMR:Q9ZW06STRING:3702.AT2G29190.1SUPFAM:SSF48371TAIR:AT2G29190tair10-symbols:APUM2tair10-symbols:PUM2UniGene:At.28148
UniGene:At.48528UniProt:Q9ZW06
Coordinates (TAIR10) chr2:-:12544260..12548071
Molecular Weight (calculated) 106662.00 Da
IEP (calculated) 5.99
GRAVY (calculated) -0.55
Length 972 amino acids
Sequence (TAIR10)
(BLAST)
001: MIPELGRRPM HRGNEDSSFG DDYEKEIGVL LGEQQRRQVE ADELERELNL YRSGSAPPTV DGSVSAAGGL FSGGGGAPFL EFGGGNKGNG FGGDDEEFRK
101: DPAYLSYYYA NMKLNPRLPP PLMSREDLRV AQRLKGSSNV LGGVGDRRKV NDSQSLFSMP PGFDQRKQHE FEVEKTSASS SEWDANGLIG LPGLGIGGKQ
201: KSFADIFQAD MGHGHPVTKQ PSRPASRNTF DENVDSKNNL SPSASQGIGA PSPYSYAAVL GSSLSRNGTP DPQAIARVPS PCLTPIGSGR VSSNDKRNTS
301: NQSPFNGGLN ESSDLVNALS GMNLSGSGGL DERGQAEQDV EKVRNYMFGL QGGHNEVNQH GFPNKSDQAQ KATGLLRNSQ LRGAQGSTYN DGGGVATQYQ
401: HLDSPNYCLN NYGLNPAVAS MMANQLGTNN YSPVYENASA ASAMGFSGMD SRLHGGGYVS SGQNLSESRN LGRFSNRMMG GGTGLQSHMA DPMYHQYADS
501: LDLLNDPSMD VNFMGNSYMN MLELQRAYLG AQKSQYGVPY KSGSPNSHTD YGSPTFGSYP GSPLAHHLLP NSLVSPCSPM RRGEVNMRYP SATRNYAGGV
601: MGSWHMDASL DEGFGSSMLE EFKSNKTRGF ELAEIAGHVV EFSSDQYGSR FIQQKLETAT SDEKNMVYEE IMPHALALMT DVFGNYVIQK FFEHGLPPQR
701: RELADKLFDN VLPLSLQMYG CRVIQKAIEV VDLDQKIKMV KELDGHVMRC VRDQNGNHVV QKCIECVPEE NIEFIISTFF GNVVTLSTHP YGCRVIQRVL
801: EHCHDPDTQS KVMDEIMSTI SMLAQDQYGN YVIQHVLEHG KPDERTVIIK ELAGKIVQMS QQKFASNVVE KCLTFGGPEE REFLVNEMLG TTDENEPLQA
901: MMKDQFANYV VQKVLETCDD QQRELILGRI KVHLNALKKY TYGKHIVARV EKLVAAGERR MALQSLTQPQ MA
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)