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AT2G29110.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plasma membrane 0.999
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : glutamate receptor 2.8
Curator
Summary (TAIR10)
member of Putative ligand-gated ion channel subunit family
Computational
Description (TAIR10)
glutamate receptor 2.8 (GLR2.8); FUNCTIONS IN: intracellular ligand-gated ion channel activity; INVOLVED IN: cellular calcium ion homeostasis, response to light stimulus; LOCATED IN: endomembrane system, membrane; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Extracellular solute-binding protein, family 3 (InterPro:IPR001638), Ionotropic glutamate receptor (InterPro:IPR001320), Extracellular ligand-binding receptor (InterPro:IPR001828), Glutamate receptor-related (InterPro:IPR015683), Ionotropic glutamate-like receptor, plant (InterPro:IPR017103); BEST Arabidopsis thaliana protein match is: glutamate receptor 2.9 (TAIR:AT2G29100.1); Has 5212 Blast hits to 5102 proteins in 531 species: Archae - 73; Bacteria - 810; Metazoa - 3457; Fungi - 0; Plants - 647; Viruses - 0; Other Eukaryotes - 225 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410XQQVeggNOG:KOG1052EMBL:AC005315EMBL:AJ311495
EMBL:CP002685EnsemblPlants:AT2G29110EnsemblPlants:AT2G29110.1entrez:817459
GeneID:817459Genevisible:Q9C5V5GO:GO:0004970GO:GO:0005262
GO:GO:0005622GO:GO:0005886GO:GO:0006816GO:GO:0008066
GO:GO:0016021GO:GO:0019722GO:GO:0070588GO:GO:0071230
Gramene:AT2G29110.1hmmpanther:PTHR18966hmmpanther:PTHR18966:SF204HOGENOM:HOG000239558
InParanoid:Q9C5V5InterPro:IPR001320InterPro:IPR001638InterPro:IPR001828
InterPro:IPR017103InterPro:IPR028082KEGG:ath:AT2G29110KO:K05387
OMA:SSEECHAPaxDb:Q9C5V5Pfam:PF00060Pfam:PF00497
Pfam:PF01094Pfam:Q9C5V5PhylomeDB:Q9C5V5PIR:T02741
PIRSF:PIRSF037090PRIDE:Q9C5V5PRO:PR:Q9C5V5ProteinModelPortal:Q9C5V5
Proteomes:UP000006548RefSeq:NP_180475.2SMART:SM00079SMR:Q9C5V5
STRING:3702.AT2G29110.1SUPFAM:SSF53822SUPFAM:SSF53850SUPFAM:SSF81324
TAIR:AT2G29110tair10-symbols:ATGLR2.8tair10-symbols:GLR2.8TMHMM:TMhelix
UniGene:At.13039UniProt:Q9C5V5
Coordinates (TAIR10) chr2:-:12506880..12510552
Molecular Weight (calculated) 107194.00 Da
IEP (calculated) 6.91
GRAVY (calculated) -0.09
Length 947 amino acids
Sequence (TAIR10)
(BLAST)
001: MNPKKNNNTF LSYFVCLFLL LEVGLGQNQI SEIKVGVVLD LNTTFSKICL TSINLALSDF YKDHPNYRTR LALHVRDSMK DTVQASAAAL DLIQNEQVSA
101: IIGPIDSMQA KFMIKLANKT QVPTISFSAT SPLLTSIKSD YFVRGTIDDS YQVKAIAAIF ESFGWRSVVA IYVDNELGEG IMPYLFDALQ DVQVDRSVIP
201: SEANDDQILK ELYKLMTRQT RVFVVHMASR LASRIFEKAT EIGMMEEGYV WLMTNGMTHM MRHIHHGRSL NTIDGVLGVR SHVPKSKGLE DFRLRWKRNF
301: KKENPWLRDD LSIFGLWAYD STTALAMAVE KTNISSFPYN NASGSSNNMT DLGTLHVSRY GPSLLEALSE IRFNGLAGRF NLIDRQLESP KFEIINFVGN
401: EERIVGFWTP SNGLVNVNSN KTTSFTGERF GPLIWPGKST IVPKGWEIPT NGKKIKVGVP VKKGFFNFVE VITDPITNIT TPKGYAIDIF EAALKKLPYS
501: VIPQYYRFES PDDDYDDLVY KVDNGTLDAV VGDVTITAYR SLYADFTLPY TESGVSMMVP VRDNENKNTW VFLKPWGLDL WVTTACFFVL IGFVVWLFEH
601: RVNTDFRGPP HHQIGTSFWF SFSTMVFAHR EKVVSNLARF VVVVWCFVVL VLTQSYTANL TSFLTVQRFQ PAAINVKDLI KNGDYVGYQH GAFVKDFLIK
701: EGFNVSKLKP FGSSEECHAL LSNGSISAAF DEVAYLRAIL SQYCSKYAIV EPTFKTAGFG FAFPRNSPLT GDVSKAILNV TQGDEMQHIE NKWFMKQNDC
801: PDPKTALSSN RLSLRSFWGL FLIAGIASFL ALLIFVFLFL YENRHTLCDD SEDSIWRKLT SLFRNFDEKD IKSHTFKSSA VHHVSSPMTQ YIPSPSTLQI
901: APRPHSPSQD RAFELRRVSF TPNEERLTTQ TIHFEDEESD IECVVEQ
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)