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AT2G29060.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 0.571
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : GRAS family transcription factor
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
GRAS family transcription factor; CONTAINS InterPro DOMAIN/s: Transcription factor GRAS (InterPro:IPR005202); BEST Arabidopsis thaliana protein match is: SCARECROW-like 14 (TAIR:AT1G07530.1); Has 4860 Blast hits to 2426 proteins in 308 species: Archae - 0; Bacteria - 15; Metazoa - 0; Fungi - 0; Plants - 4833; Viruses - 0; Other Eukaryotes - 12 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IFAEeggNOG:ENOG410YMPHEMBL:AC005315EMBL:CP002685EnsemblPlants:AT2G29060EnsemblPlants:AT2G29060.1entrez:817454
GeneID:817454GO:GO:0005634GO:GO:0006351GO:GO:0006355Gramene:AT2G29060.1hmmpanther:PTHR31636hmmpanther:PTHR31636:SF54
HOGENOM:HOG000238576InParanoid:P0C883InterPro:IPR005202iPTMnet:P0C883KEGG:ath:AT2G29060OMA:FQWPPLIPaxDb:P0C883
Pfam:P0C883Pfam:PF03514Pfscan:PS50985PhylomeDB:P0C883PIR:T02736PRIDE:P0C883PRO:PR:P0C883
PROSITE:PS50985Proteomes:UP000006548RefSeq:NP_180470.2TAIR:AT2G29060UniGene:At.38529UniGene:At.75287UniProt:P0C883
Coordinates (TAIR10) chr2:+:12481991..12484075
Molecular Weight (calculated) 78105.40 Da
IEP (calculated) 5.89
GRAVY (calculated) -0.41
Length 694 amino acids
Sequence (TAIR10)
(BLAST)
001: MGSYSAGFPG SLDWFDFPGL GNGSYLNDQP LLDIGSVPPP LDPYPQQNLA SADADFSDSV LKYISQVLME EDMEDKPCMF HDALSLQAAE KSLYEALGEK
101: YPVDDSDQPL TTTTSLAQLV SSPGGSSYAS STTTTSSDSQ WSFDCLENNR PSSWLQTPIP SNFIFQSTST RASSGNAVFG SSFSGDLVSN MFNDTDLALQ
201: FKKGMEEASK FLPKSSQLVI DNSVPNRLTG KKSHWREEEH LTEERSKKQS AIYVDETDEL TDMFDNILIF GEAKEQPVCI LNESFPKEPA KASTFSKSPK
301: GEKPEASGNS YTKETPDLRT MLVSCAQAVS INDRRTADEL LSRIRQHSSS YGDGTERLAH YFANSLEARL AGIGTQVYTA LSSKKTSTSD MLKAYQTYIS
401: VCPFKKIAII FANHSIMRLA SSANAKTIHI IDFGISDGFQ WPSLIHRLAW RRGSSCKLRI TGIELPQRGF RPAEGVIETG RRLAKYCQKF NIPFEYNAIA
501: QKWESIKLED LKLKEGEFVA VNSLFRFRNL LDETVAVHSP RDTVLKLIRK IKPDVFIPGI LSGSYNAPFF VTRFREVLFH YSSLFDMCDT NLTREDPMRV
601: MFEKEFYGRE IMNVVACEGT ERVERPESYK QWQARAMRAG FRQIPLEKEL VQKLKLMVES GYKPKEFDVD QDCHWLLQGW KGRIVYGSSI WVPL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)