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AT2G29050.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
vacuole 0.886
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
FP Images

Arabidopsis cell culture (plastidal marker)

At2g29050-GFP
(full-length)
plastidal marker-RFPoverlay

Images by Sandra Tanz
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : RHOMBOID-like 1
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
RHOMBOID-like 1 (RBL1); FUNCTIONS IN: serine-type endopeptidase activity; LOCATED IN: Golgi apparatus; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase S54, rhomboid (InterPro:IPR002610); BEST Arabidopsis thaliana protein match is: RHOMBOID-like protein 4 (TAIR:AT3G53780.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT2G29050-MONOMEREC:3.4.21.-eggNOG:COG0705eggNOG:KOG2289
EMBL:AB195672EMBL:AC005315EMBL:AK228551EMBL:CP002685
EnsemblPlants:AT2G29050EnsemblPlants:AT2G29050.1EnsemblPlants:AT2G29050.2entrez:817453
ExpressionAtlas:Q0WQX7Gene3D:1.20.1540.10GeneID:817453Genevisible:Q0WQX7
GO:GO:0000139GO:GO:0004252GO:GO:0005794GO:GO:0016021
GO:GO:0016485hmmpanther:PTHR22936hmmpanther:PTHR22936:SF25HOGENOM:HOG000239666
InParanoid:Q0WQX7InterPro:IPR002610InterPro:IPR022764KEGG:ath:AT2G29050
MEROPS:S54.A05OMA:SFIMITKPANTHER:PTHR22936PaxDb:Q0WQX7
Pfam:PF01694PhylomeDB:Q0WQX7PIR:T02735PRIDE:Q0WQX7
PRO:PR:Q0WQX7ProteinModelPortal:Q0WQX7Proteomes:UP000006548RefSeq:NP_001077973.1
RefSeq:NP_180469.3SMR:Q0WQX7STRING:3702.AT2G29050.1SUPFAM:SSF144091
TAIR:AT2G29050tair10-symbols:ATRBL1tair10-symbols:RBL1TMHMM:TMhelix
UniGene:At.47832UniProt:Q0WQX7
Coordinates (TAIR10) chr2:+:12478245..12480121
Molecular Weight (calculated) 43362.40 Da
IEP (calculated) 9.92
GRAVY (calculated) 0.31
Length 389 amino acids
Sequence (TAIR10)
(BLAST)
001: MARDRREGLE IKVVNPPAAA TNNVAVETSP ATATRRRRQQ QRASFAEFRP FKLWFPWLVP AIVVANIALF AISMFINNCP KNSAYCLARF LGRFAFQPMK
101: ENPLLGPSSL TLEKMGALDV SMVVHKHEVW RLFTCIWLHA GVFHVLANML SLIFIGIRLE QEFGFVRIGL LYMISGFGGS LLSSLFNRAG ISVGASGALF
201: GLLGAMLSEL LTNWTIYANK FAALLTLIFI IAINLAVGIL PHVDNFAHLG GFTSGFLLGF VFLIRPQYGY FNQRNNPRGY AAPSAKSKHK PYQYVLWITS
301: LVLLIAGYTA GLVVLLRGTD LNKHCSWCHY LSCIPTSLWS CKSQNVYCES SQIGQQMNLT CITNGKTEMY KLSNDIPSRI QQLCSQLCR
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)