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AT2G28960.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plasma membrane 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:30447334 (2019): plasma membrane
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:22318864 (2012): plasma membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Leucine-rich repeat protein kinase family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Leucine-rich repeat protein kinase family protein; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: endomembrane system; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: Leucine-rich repeat protein kinase family protein (TAIR:AT2G29000.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT2G28960-MONOMERBioGrid:2795EC:2.7.11.1eggNOG:COG0515
eggNOG:ENOG410IF1SEMBL:AC005315EMBL:CP002685EMBL:FJ708704
EnsemblPlants:AT2G28960EnsemblPlants:AT2G28960.1entrez:817445Gene3D:2.60.120.200
Gene3D:3.80.10.10GeneID:817445Genevisible:C0LGL4GO:GO:0004674
GO:GO:0005524GO:GO:0016021Gramene:AT2G28960.1hmmpanther:PTHR27003
hmmpanther:PTHR27003:SF44HOGENOM:HOG000116550InParanoid:C0LGL4InterPro:IPR000719
InterPro:IPR001611InterPro:IPR008271InterPro:IPR011009InterPro:IPR013320
InterPro:IPR017441InterPro:IPR024788InterPro:IPR032675KEGG:ath:AT2G28960
OMA:CNDASCKPaxDb:C0LGL4Pfam:C0LGL4Pfam:PF00069
Pfam:PF07714Pfam:PF12819Pfam:PF13855Pfscan:PS50011
PhylomeDB:C0LGL4PIR:T02728PRIDE:C0LGL4PRO:PR:C0LGL4
PROSITE:PS00107PROSITE:PS00108PROSITE:PS50011ProteinModelPortal:C0LGL4
Proteomes:UP000006548RefSeq:NP_180462.2scanprosite:PS00107scanprosite:PS00108
SMART:SM00220SMR:C0LGL4STRING:3702.AT2G28960.1SUPFAM:SSF52058
SUPFAM:SSF56112TAIR:AT2G28960TMHMM:TMhelixUniGene:At.38545
UniProt:C0LGL4
Coordinates (TAIR10) chr2:-:12438058..12442347
Molecular Weight (calculated) 98970.30 Da
IEP (calculated) 6.30
GRAVY (calculated) -0.28
Length 880 amino acids
Sequence (TAIR10)
(BLAST)
001: MEGRRQRLLV FIFGALAITH LVQAQPPDQR GFISLDCGLP VNESPYTDPR TGLTFSSDAD FILSGLRGEA GDDNTYIYRQ YKDLRYFPDG IRNCYNLKVE
101: QGINYLIRAG FGYGNYDGLN VYPKFDLHVG PNMWIAVDLE FGKDREIIYM TTSNLLQICL VKTGSTIPMI STLELRPLRN DSYLTQFGPL DLIYRRAYSS
201: NSTGFIRYPD DIFDRKWDRY NEFETDVNTT LNVRSSSPFQ VPEAVSRMGI TPENASLPLR FYVSLDDDSD KVNVYFHFAE IQALRGNETR EFDIELEEDI
301: IQSAYSPTML QSDTKYNLSP HKCSSGLCYL KLVRTPRSTL PPLISAIEAF KVVDFPYAET NPNDVAAMKD IEAFYGLKMI SWQGDPCVPE LLKWEDLKCS
401: YTNKSTPPRI ISLDLSSRGL KGVIAPAFQN LTELRKLDLS NNSFTGGVPE FLASMKSLSI INLNWNDLTG PLPKLLLDRE KNGLKLTIQG NPKLCNDASC
501: KNNNNQTYIV PVVASVASVL IIIAVLILIL VFKKRRPTQV DSLPTVQHGL PNRPSIFTQT KRFTYSEVEA LTDNFERVLG EGGFGVVYHG ILNGTQPIAV
601: KLLSQSSVQG YKEFKAEVEL LLRVHHVNLV SLVGYCDEES NLALLYEYAP NGDLKQHLSG ERGGSPLKWS SRLKIVVETA QGLEYLHTGC KPPMVHRDVK
701: TTNILLDEHF QAKLADFGLS RSFPVGGETH VSTAVAGTPG YLDPEYYRTN RLNEKSDVYS FGIVLLEIIT SRPVIQQTRE KPHIAAWVGY MLTKGDIENV
801: VDPRLNRDYE PTSVWKALEI AMSCVNPSSE KRPTMSQVTN ELKQCLTLEN SKRGVREDMG SRSSVEMSTS FTTEINPKAR
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)