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AT2G28950.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
extracellular 1.000
ASURE: extracellular
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:19334764 (2009): plasma membrane
  • PMID:16356755 (2006): extracellular region
  • PMID:16287169 (2006): extracellular region
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : expansin A6
Curator
Summary (TAIR10)
Encodes an expansin. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio). Involved in the formation of nematode-induced syncytia in roots of Arabidopsis thaliana.
Computational
Description (TAIR10)
expansin A6 (EXPA6); CONTAINS InterPro DOMAIN/s: Barwin-related endoglucanase (InterPro:IPR009009), Pollen allergen, N-terminal (InterPro:IPR014734), Expansin (InterPro:IPR002963), Rare lipoprotein A (InterPro:IPR005132), Expansin/Lol pI (InterPro:IPR007118), Expansin 45, endoglucanase-like (InterPro:IPR007112), Pollen allergen/expansin, C-terminal (InterPro:IPR007117); BEST Arabidopsis thaliana protein match is: expansin A4 (TAIR:AT2G39700.1); Has 2139 Blast hits to 2136 proteins in 145 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 24; Plants - 2081; Viruses - 0; Other Eukaryotes - 32 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IKDMeggNOG:ENOG410YEM2EMBL:AC005315EMBL:AC005727EMBL:AY058193EMBL:AY072409EMBL:AY085770
EMBL:BT003405EMBL:CP002685EMBL:U30480EnsemblPlants:AT2G28950EnsemblPlants:AT2G28950.1entrez:817444Gene3D:2.40.40.10
Gene3D:2.60.40.760GeneID:817444Genevisible:Q38865GO:GO:0005576GO:GO:0006949GO:GO:0009505GO:GO:0009664
GO:GO:0016020Gramene:AT2G28950.1hmmpanther:PTHR31867hmmpanther:PTHR31867:SF9HOGENOM:HOG000220793InParanoid:Q38865InterPro:IPR002963
InterPro:IPR007112InterPro:IPR007117InterPro:IPR007118InterPro:IPR009009KEGG:ath:AT2G28950OMA:NWISMSRPaxDb:Q38865
Pfam:PF01357Pfam:PF03330Pfam:Q38865Pfscan:PS50842Pfscan:PS50843PhylomeDB:Q38865PIR:T02727
PIR:T50653PRIDE:Q38865PRINTS:PR01225PRINTS:PR01226PRO:PR:Q38865PROSITE:PS50842PROSITE:PS50843
ProteinModelPortal:Q38865Proteomes:UP000006548RefSeq:NP_180461.1SMART:SM00837SMR:Q38865STRING:3702.AT2G28950.1SUPFAM:SSF49590
SUPFAM:SSF50685TAIR:AT2G28950tair10-symbols:ATEXP6tair10-symbols:ATEXPA6tair10-symbols:ATHEXP ALPHA 1.8tair10-symbols:EXPA6UniGene:At.23765
UniProt:Q38865
Coordinates (TAIR10) chr2:-:12431840..12433482
Molecular Weight (calculated) 27819.30 Da
IEP (calculated) 10.03
GRAVY (calculated) -0.04
Length 257 amino acids
Sequence (TAIR10)
(BLAST)
001: MAMLGLVLSV LTTILALSEA RIPGVYNGGG WETAHATFYG GSDASGTMGG ACGYGNLYSQ GYGVNTAALS TALFNNGFSC GACFELKCAS DPKWCHSGSP
101: SIFITATNFC PPNFAQPSDN GGWCNPPRPH FDLAMPMFLK IAEYRAGIVP VSFRRVPCRK RGGIRFTING FRYFNLVLVT NVAGAGNIVR LGVKGTHTSW
201: MTMSRNWGQN WQSNSVLVGQ SLSFRVTSSD RRSSTSWNIA PANWKFGQTF MGKNFRV
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)