suba logo
AT2G28940.1
Subcellular Consensus
(Prediction and Experimental)

min: heatmap :max

.
SUBAcon:
plasma membrane 1.000
ASURE: plasma membrane
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Protein kinase superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Protein kinase superfamily protein; FUNCTIONS IN: protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: endomembrane system; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, catalytic domain (InterPro:IPR000719), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: Protein kinase superfamily protein (TAIR:AT2G39110.1); Has 109107 Blast hits to 107943 proteins in 3092 species: Archae - 87; Bacteria - 12159; Metazoa - 40133; Fungi - 8935; Plants - 31872; Viruses - 346; Other Eukaryotes - 15575 (source: NCBI BLink).
Protein Annotations
eggNOG:COG0515eggNOG:KOG1187EMBL:CP002685EnsemblPlants:AT2G28940EnsemblPlants:AT2G28940.1entrez:817443ExpressionAtlas:F4IJP2
GeneID:817443GO:GO:0004672GO:GO:0005524Gramene:AT2G28940.1hmmpanther:PTHR27001hmmpanther:PTHR27001:SF140InterPro:IPR000719
InterPro:IPR011009KEGG:ath:AT2G28940PaxDb:F4IJP2Pfam:PF00069Pfscan:PS50011PhylomeDB:F4IJP2PRIDE:F4IJP2
PROSITE:PS50011ProteinModelPortal:F4IJP2Proteomes:UP000006548RefSeq:NP_850128.1SMR:F4IJP2STRING:3702.AT2G28940.2SUPFAM:SSF56112
TAIR:AT2G28940UniGene:At.46050UniGene:At.69839UniProt:F4IJP2
Coordinates (TAIR10) chr2:-:12426853..12428314
Molecular Weight (calculated) 39124.70 Da
IEP (calculated) 9.01
GRAVY (calculated) -0.26
Length 343 amino acids
Sequence (TAIR10)
(BLAST)
001: MFQTLMVLIR RLMLLLNSLI VKVYSVQGHK EWINEVNFLG VVNHPNLVKL VGYCADDDER GMQRLLVYEL MCNKSLEDHL VGRVVSVSLP WMMRLKIAQD
101: AAQGLAYLHE EMDFQLIFRD FKSSNILLDE RFGAKLSDFG LARQGPPEGL GHVSTSVVGT VGYAAPEYVQ TGKLTAKSDV WSFGVVLYEL ITGRRAVDRN
201: RPRGEQKLLE WVKPYVSDSK KFHLIVDPRL EGQYYCMKSV QRVAALANKC LMKQPKSRPK MSEVVSLLGR IIDEEAENVP PPVADETEEI IKAELNGESE
301: PELKKQGSSY RKKVLDLRDK MNLNKSLSKL DWRNWTPGLV RTW
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)