AT2G28910.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 ASURE: nucleus What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : CAX interacting protein 4 | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Encodes a CAX-interacting protein (CXIP4). The gene product is located in the nucleus of GFP-CXIP4-expressing yeast cells. When transiently expressed in the tobacco leaves, GFP-CXIP4 locates to the nucleus as well as in discrete areas of the cytoplasm (which do not overlap with mitochondria). | ||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
CAX interacting protein 4 (CXIP4); FUNCTIONS IN: zinc ion binding, nucleic acid binding; INVOLVED IN: positive regulation of calcium ion transport, response to zinc ion; LOCATED IN: nucleus, cytoplasm; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, CCHC-type (InterPro:IPR001878); Has 71192 Blast hits to 36424 proteins in 1643 species: Archae - 52; Bacteria - 6434; Metazoa - 32894; Fungi - 8707; Plants - 4806; Viruses - 452; Other Eukaryotes - 17847 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr2:-:12415992..12416990 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 37834.30 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 10.46 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -1.69 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 332 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MPATAGRVRM PANNRVHSSA ALQTHGIWQS AIGYDPYAPT SKEEPKTTQQ KTEDPENSYA SFQGLLALAR ITGSNNDEAR GSCKKCGRVG HLTFQCRNFL 101: STKEDKEKDP GAIEAAVLSG LEKIRRGVGK GEVEEVSSEE EEESESSDSD VDSEMERIIA ERFGKKKGGS SVKKTSSVRK KKKRVSDESD SDSDSGDRKR 201: RRRSMKKRSS HKRRSLSESE DEEEGRSKRR KERRGRKRDE DDSDESEDED DRRVKRKSRK EKRRRRSRRN HSDDSDSESS EDDRRQKRRN KVAASSDSEA 301: NVSGDDVSRV GRGSSKRSEK KSRKRHHRKE RE |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)