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AT2G28900.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plastid 1.000
ASURE: plastid
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:27943495 (2017): mitochondrion
  • PMID:25900983 (2015): Golgi
  • PMID:25900983 (2015): plant-type vacuole plant-type vacuole membrane
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi Golgi apparatus Golgi membrane
  • PMID:25641898 (2015): plasma membrane
  • PMID:24872594 (2014): plastid plastid thylakoid
  • PMID:24872594 (2014): plastid plastid envelope
  • PMID:23667806 (2013): plastid plastid thylakoid
  • PMID:23396599 (2013): nucleus nuclear envelope nuclear inner membrane
  • PMID:23390424 (2013): plastid plastid envelope
  • PMID:22923678 (2012): plastid
  • PMID:21841088 (2011): mitochondrion
  • PMID:20061580 (2010): plastid plastid envelope
  • PMID:19334764 (2009): plasma membrane
  • PMID:18431481 (2008): plastid plastid envelope
  • PMID:15539469 (2004): plant-type vacuole
  • PMID:15028209 (2004): plastid
  • PMID:12938931 (2003): plastid
  • PMID:12766230 (2003): plastid
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : outer plastid envelope protein 16-1
Curator
Summary (TAIR10)
Encodes AtOEP16, a 16-KDa plastid outer membrane protein involved in plastid import of protochlorophyllide oxidoreductase A. Predominantly expressed in leaves and is also inducible by cold treatment.
Computational
Description (TAIR10)
outer plastid envelope protein 16-1 (OEP16-1); FUNCTIONS IN: protein transporter activity, P-P-bond-hydrolysis-driven protein transmembrane transporter activity; INVOLVED IN: in 7 processes; LOCATED IN: chloroplast, plastid outer membrane, vacuole, chloroplast envelope; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Mitochondrial inner membrane translocase complex, subunit Tim17/22 (InterPro:IPR003397); BEST Arabidopsis thaliana protein match is: Mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein (TAIR:AT4G16160.1); Has 150 Blast hits to 150 proteins in 21 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 150; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
BioGrid:2789DNASU:817439eggNOG:ENOG410IX6CeggNOG:ENOG410YKVUEMBL:AC005727EMBL:AY045593EMBL:AY084261
EMBL:AY093782EMBL:CP002685EMBL:DQ386642EnsemblPlants:AT2G28900EnsemblPlants:AT2G28900.1entrez:817439GeneID:817439
Genevisible:Q9ZV24GO:GO:0003333GO:GO:0005744GO:GO:0005773GO:GO:0009409GO:GO:0009507GO:GO:0009527
GO:GO:0009536GO:GO:0009611GO:GO:0009707GO:GO:0009744GO:GO:0009749GO:GO:0009753GO:GO:0009941
GO:GO:0015171GO:GO:0015266GO:GO:0015288GO:GO:0030150GO:GO:0031305GO:GO:0034426GO:GO:0042803
GO:GO:0045037GO:GO:0046930Gramene:AT2G28900.1hmmpanther:PTHR15371hmmpanther:PTHR15371:SF2HOGENOM:HOG000239997InParanoid:Q9ZV24
IntAct:Q9ZV24InterPro:IPR003397KEGG:ath:AT2G28900OMA:WKNAMLAPaxDb:Q9ZV24Pfam:PF02466Pfam:Q9ZV24
PhylomeDB:Q9ZV24PIR:C84690PRIDE:Q9ZV24PRO:PR:Q9ZV24Proteomes:UP000006548RefSeq:NP_180456.1STRING:3702.AT2G28900.1
TAIR:AT2G28900tair10-symbols:ATOEP16-1tair10-symbols:ATOEP16-Ltair10-symbols:OEP16tair10-symbols:OEP16-1UniGene:At.25376UniProt:Q9ZV24
Coordinates (TAIR10) chr2:-:12414423..12415459
Molecular Weight (calculated) 15482.60 Da
IEP (calculated) 9.59
GRAVY (calculated) 0.12
Length 148 amino acids
Sequence (TAIR10)
(BLAST)
001: MPSSTFSGTV STPKLSVAVD MGNPFLNLTV DAFLKIGAVG VTKSLAEDTY KAIDKGSLSK STLEHALKKL CKEGVYWGAA GGVYIGTEYG IERIRGSRDW
101: KNAMLAGAAT GAVLSAVGKK GKDTIVIDAI LGGALATASQ FVNNHYFY
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)