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AT2G28840.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 0.776
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : XB3 ortholog 1 in Arabidopsis thaliana
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
XB3 ortholog 1 in Arabidopsis thaliana (XBAT31); FUNCTIONS IN: zinc ion binding; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Ankyrin repeat-containing domain (InterPro:IPR020683), Ankyrin repeat (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: XB3 ortholog 3 in Arabidopsis thaliana (TAIR:AT5G07270.1); Has 52906 Blast hits to 22710 proteins in 954 species: Archae - 64; Bacteria - 3597; Metazoa - 29466; Fungi - 4564; Plants - 3287; Viruses - 345; Other Eukaryotes - 11583 (source: NCBI BLink).
Protein Annotations
BioGrid:2783EC:6.3.2.-eggNOG:COG0666eggNOG:ENOG410IJ0UEMBL:AC005727EMBL:AF370581EMBL:AF428301
EMBL:AK222223EMBL:AY042842EMBL:AY081458EMBL:BT000727EMBL:CP002685EMBL:DQ086863EnsemblPlants:AT2G28840
EnsemblPlants:AT2G28840.1entrez:817433ExpressionAtlas:Q94B55Gene3D:1.25.40.20Gene3D:3.30.40.10GeneID:817433Genevisible:Q94B55
GO:GO:0008270GO:GO:0016567GO:GO:0016874hmmpanther:PTHR24128hmmpanther:PTHR24128:SF14HOGENOM:HOG000238698InParanoid:Q94B55
IntAct:Q94B55InterPro:IPR001841InterPro:IPR002110InterPro:IPR013083InterPro:IPR020683ncoils:CoilOMA:SHIASSW
PaxDb:Q94B55Pfam:PF12796Pfam:PF13857Pfam:Q94B55Pfscan:PS50088Pfscan:PS50089Pfscan:PS50297
PhylomeDB:Q94B55PIR:E84689PRIDE:Q94B55PRO:PR:Q94B55PROSITE:PS50088PROSITE:PS50089PROSITE:PS50297
ProteinModelPortal:Q94B55Proteomes:UP000006548RefSeq:NP_180450.2SMART:SM00248SMR:Q94B55STRING:3702.AT2G28840.1SUPFAM:SSF48403
SUPFAM:SSF57850TAIR:AT2G28840tair10-symbols:XBAT31UniGene:At.21021UniPathway:UPA00143UniProt:Q94B55
Coordinates (TAIR10) chr2:+:12378542..12380474
Molecular Weight (calculated) 49612.60 Da
IEP (calculated) 7.80
GRAVY (calculated) -0.14
Length 456 amino acids
Sequence (TAIR10)
(BLAST)
001: MGQSMSCGSR PEHGIFASVQ CGDIITIRRV MATEPSLLNQ TTPYDRHSVL HVAAANGQIE ILSLLLERFT NPDLLNRHKQ TPLMLAAMYG RISCVKKLAE
101: VGANILMFDS VNRRTCLHYA AYYGHANCVQ AILSAAQSSP VAVHWGYARF VNIRDDKGAT PLHLAARQRR PECVNVLLDS GSLVCASTSV YGSPGSTPLH
201: LAARSGSIDC VRKLLAWGAD RLQRDASGRI PYVVAMKHKH GACGALLNPS SAEPLVWPSP LKFISELNDE AKLLLEQALM EANREREKTI LKGTAYSLPS
301: PSFSDTDDNM SEVSDTELCC ICFEQVCTIE VKDCGHQMCA QCTLALCCHN KPNPTTSTVT PPVCPFCRST IACLVVAQNN NNNNEKSKSL DDVVVVDREA
401: GDVSSSKFRK HRRSINLGEE SSSFMGLSTI GSFGRITGRG SGRIAAENEL MDKPIL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)