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AT2G28830.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
cytosol 0.904
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:24361574 (2014): plastid plastid stroma
  • PMID:19334764 (2009): plasma membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : PLANT U-BOX 12
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
PLANT U-BOX 12 (PUB12); FUNCTIONS IN: ubiquitin-protein ligase activity, structural constituent of ribosome, rRNA binding, binding; INVOLVED IN: response to chitin; LOCATED IN: ubiquitin ligase complex, ribosome, intracellular; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L16 (InterPro:IPR000114), U box domain (InterPro:IPR003613), Armadillo-like helical (InterPro:IPR011989), Ribosomal protein L10e/L16 (InterPro:IPR016180), Armadillo (InterPro:IPR000225), Armadillo-type fold (InterPro:IPR016024), Ribosomal protein L16, conserved site (InterPro:IPR020798); BEST Arabidopsis thaliana protein match is: plant U-box 13 (TAIR:AT3G46510.1); Has 16927 Blast hits to 15027 proteins in 4135 species: Archae - 0; Bacteria - 5491; Metazoa - 1535; Fungi - 908; Plants - 5936; Viruses - 3; Other Eukaryotes - 3054 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:GQT-2570-MONOMERBioGrid:2782EC:6.3.2.-eggNOG:ENOG410XRTNeggNOG:KOG0167eggNOG:KOG0258eggNOG:KOG3422
EMBL:AC005727EMBL:AK226821EMBL:AY035038EMBL:CP002685EnsemblPlants:AT2G28830EnsemblPlants:AT2G28830.1entrez:817432
ExpressionAtlas:Q9ZV31Gene3D:1.25.10.10Gene3D:3.30.40.10Genevisible:Q9ZV31GO:GO:0004842GO:GO:0016874Gramene:AT2G28830.1
hmmpanther:PTHR23315hmmpanther:PTHR23315:SF69InParanoid:Q9ZV31InterPro:IPR000225InterPro:IPR003613InterPro:IPR011989InterPro:IPR013083
InterPro:IPR016024PaxDb:Q9ZV31Pfam:PF00252Pfam:PF00514Pfam:PF04564Pfam:Q84WZ8Pfam:Q9ZV31
Pfscan:PS50176Pfscan:PS51698PhylomeDB:Q9ZV31PIR:D84689PRO:PR:Q9ZV31PROSITE:PS50176PROSITE:PS51698
ProteinModelPortal:Q9ZV31Proteomes:UP000006548scanprosite:PS00701SMART:SM00185SMART:SM00504SMR:Q9ZV31STRING:3702.AT2G28830.1
SUPFAM:SSF48371SUPFAM:SSF57850TAIR:AT2G28830tair10-symbols:AtPUB12tair10-symbols:PUB12TIGRfam:TIGR01164UniGene:At.13230
UniPathway:UPA00143UniProt:Q84WZ8UniProt:Q9ZV31
Coordinates (TAIR10) chr2:-:12367001..12370608
Molecular Weight (calculated) 106924.00 Da
IEP (calculated) 9.93
GRAVY (calculated) -0.34
Length 962 amino acids
Sequence (TAIR10)
(BLAST)
001: MAKSEKHKLA QTLIDSINEI ASISDSVTPM KKHCANLSRR LSLLLPMLEE IRDNQESSSE VVNALLSVKQ SLLHAKDLLS FVSHVSKIYL VLERDQVMVK
101: FQKVTSLLEQ ALSIIPYENL EISDELKEQV ELVLVQLRRS LGKRGGDVYD DELYKDVLSL YSGRGSVMES DMVRRVAEKL QLMTITDLTQ ESLALLDMVS
201: SSGGDDPGES FEKMSMVLKK IKDFVQTYNP NLDDAPLRLK SSLPKSRDDD RDMLIPPEEF RCPISLELMT DPVIVSSGQT YERECIKKWL EGGHLTCPKT
301: QETLTSDIMT PNYVLRSLIA QWCESNGIEP PKRPNISQPS SKASSSSSAP DDEHNKIEEL LLKLTSQQPE DRRSAAGEIR LLAKQNNHNR VAIAASGAIP
401: LLVNLLTISN DSRTQEHAVT SILNLSICQE NKGKIVYSSG AVPGIVHVLQ KGSMEARENA AATLFSLSVI DENKVTIGAA GAIPPLVTLL SEGSQRGKKD
501: AATALFNLCI FQGNKGKAVR AGLVPVLMRL LTEPESGMVD ESLSILAILS SHPDGKSEVG AADAVPVLVD FIRSGSPRNK ENSAAVLVHL CSWNQQHLIE
601: AQKLGIMDLL IEMAENGTDR GKRKAAQLLN RFSRFNDQQK QHSGLEGKIN VQKNAFIFSL SSKFYRSESS KMQRFMFSRV VEHQRQISRG FLSLVPSLSP
701: TAVPAMSRFF PKITASDSTS SIPFFTPDFI NPKKTLEESL NNLEGLTCNQ AEREMYLFPQ INQQRLLNTT GSRFGQVLGT WQFRCTILPA RVNRVREVHE
801: TSNNEKKQQK QKSSVNEKKP KKKKKSSISD IPRRTKFQKH HRGRINKGVS SQGYICSRYA LQTLEPAWIT SRQIEAGRRA MTRNIGRGLT VRVHIFADKP
901: VTVRPPETRM GRGKGAPAFW VAVVKPGKII YEMGGVSEKV AREAISIAAS KLPAKTKFII SK
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)