AT2G28780.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : | ||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: inflorescence meristem, root, flower; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF939, bacterial (InterPro:IPR010343); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G09450.1); Has 671 Blast hits to 667 proteins in 305 species: Archae - 0; Bacteria - 588; Metazoa - 0; Fungi - 2; Plants - 66; Viruses - 0; Other Eukaryotes - 15 (source: NCBI BLink). | ||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr2:-:12340099..12343281 | ||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 87989.40 Da | ||||||||||||||||||||||||||||
| IEP (calculated) | 8.75 | ||||||||||||||||||||||||||||
| GRAVY (calculated) | 0.10 | ||||||||||||||||||||||||||||
| Length | 796 amino acids | ||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MLMTERGRAM WRTCLASAFR TALACTIVGS ATLYGPEWIN RHVAFPAFSY VTVILIITDA TLGDTLRGCW LALYATCQSV GPAIVTLKLI RPARLTAETT 101: ALAAALAAFV VVLPNSSTHL VAKRIALGQI VLIYVIGYIK GAKTDPVMHP LQVAASTALG VVACVLALLV PLPRLATCEV KQSCKELGQN VTTRVKLYMK 201: AFCSDDSMSA TASVSQARVL ARSSSKLYQT LKRYQPSMTW ERLPFKIWRW QNVNDNKGEK LQSMEIALRG MEMVVASKSP IPSSLLAGEV KEDLKNIQER 301: VILSIKRVNN SSQPSVTPES DPKNPDECLQ TLQEIPGTPQ DLPFYFFLFC IRLLETIIIA KPEENKVKVL ENKFKTRSWI SDWDSKKIMP ALKLSLSLGL 401: AILLGSMFSK PNGYWAGLPV AVSFAAAREA TFKVTNVKAQ GTVIGTVYGV MGCFVFQKFL TVRFLSLLPW FLFSSFLSRS KMYGQAGGIS AAIGAVLILG 501: RKNFGPPSEF AIERIIETFI GLSCSIMVEL VFQPTRAANI AKLELSRSFH ALYECASLFG AKASKADIME SQKKLRSHLN ELKKFTAEAH AEPSFWFSPF 601: NFSCYEKLFK SLSKMADLLQ FSGYAIGFLG EQGKTKSPQC KEILSNVDKD LKSLTESIGL LAKSFEEITL LKSLDALEKA LAKSDNTSWD IELGKTPNPS 701: FSTAVSEPEK ILETYLQHCR SVADGLFRVE EDGEEEVEVD KSEVVLSLCA LGFCVERIGK ETREIEEMVK EVVQSENPSS HVNLHEISCK IRSLYK |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)