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AT2G28720.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:25900983 (2015): Golgi Golgi apparatus Golgi membrane
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
  • PMID:24134884 (2013): cytoskeleton microtubules
  • PMID:23396599 (2013): nucleus nuclear envelope nuclear inner membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Histone superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Histone superfamily protein; FUNCTIONS IN: DNA binding; INVOLVED IN: nucleosome assembly; LOCATED IN: nucleus, nucleosome; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Histone H2B (InterPro:IPR000558), Histone-fold (InterPro:IPR009072), Histone core (InterPro:IPR007125); BEST Arabidopsis thaliana protein match is: Histone superfamily protein (TAIR:AT3G45980.1); Has 3535 Blast hits to 3431 proteins in 349 species: Archae - 0; Bacteria - 57; Metazoa - 2253; Fungi - 226; Plants - 491; Viruses - 2; Other Eukaryotes - 506 (source: NCBI BLink).
Protein Annotations
DNASU:817421eggNOG:ENOG4111NV5eggNOG:KOG1744EMBL:AC007184EMBL:AF325075EMBL:AY057605EMBL:AY085391
EMBL:AY124835EMBL:CP002685EnsemblPlants:AT2G28720EnsemblPlants:AT2G28720.1entrez:817421Gene3D:1.10.20.10GeneID:817421
Genevisible:Q9SI96GO:GO:0000786GO:GO:0003677GO:GO:0005634Gramene:AT2G28720.1hmmpanther:PTHR23428HOGENOM:HOG000231213
InParanoid:Q9SI96InterPro:IPR000558InterPro:IPR007125InterPro:IPR009072KEGG:ath:AT2G28720KO:K11252OMA:MGIMDSF
PANTHER:PTHR23428PaxDb:Q9SI96Pfam:PF00125Pfam:Q9SI96PhylomeDB:Q9SI96PIR:D84688PRIDE:Q9SI96
PRINTS:PR00621PRO:PR:Q9SI96PROSITE:PS00357ProteinModelPortal:Q9SI96Proteomes:UP000006548RefSeq:NP_180440.1scanprosite:PS00357
SMART:SM00427SMR:Q9SI96STRING:3702.AT2G28720.1SUPFAM:SSF47113TAIR:AT2G28720UniGene:At.22918UniProt:Q9SI96
Coordinates (TAIR10) chr2:+:12327043..12327498
Molecular Weight (calculated) 16530.30 Da
IEP (calculated) 10.74
GRAVY (calculated) -0.68
Length 151 amino acids
Sequence (TAIR10)
(BLAST)
001: MAPKAGKKPA EKKPAEKAPA EEEKVAEKAP AEKKPKAGKK LPKEAVTGGV EKKKKRVKKS TETYKIYIFK VLKQVHPDIG ISSKAMGIMN SFINDIFEKL
101: AQEASKLARY NKKPTITSRE IQTAVRLVLP GELAKHAVSE GTKAVTKFTS S
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)