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AT2G28710.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data no PPI data
Description (TAIR10) protein_coding : C2H2-type zinc finger family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
C2H2-type zinc finger family protein; FUNCTIONS IN: sequence-specific DNA binding transcription factor activity, zinc ion binding, nucleic acid binding; INVOLVED IN: regulation of transcription; LOCATED IN: intracellular; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: 4 anthesis; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Zinc finger, C2H2-type (InterPro:IPR007087); BEST Arabidopsis thaliana protein match is: C2H2-type zinc finger family protein (TAIR:AT5G59820.1); Has 1339 Blast hits to 1281 proteins in 119 species: Archae - 0; Bacteria - 0; Metazoa - 497; Fungi - 0; Plants - 827; Viruses - 0; Other Eukaryotes - 15 (source: NCBI BLink).
Protein Annotations
DNASU:817420eggNOG:COG5048eggNOG:KOG1721EMBL:AC007184
EMBL:BT029330EMBL:CP002685EnsemblPlants:AT2G28710EnsemblPlants:AT2G28710.1
entrez:817420GeneID:817420GO:GO:0003700GO:GO:0006355
GO:GO:0046872Gramene:AT2G28710.1hmmpanther:PTHR26374hmmpanther:PTHR26374:SF207
HOGENOM:HOG000238452InterPro:IPR007087InterPro:IPR015880KEGG:ath:AT2G28710
OMA:ALDMANCPfam:PF13912Pfscan:PS50157PhylomeDB:Q9SI97
PIR:C84688PROSITE:PS00028PROSITE:PS50157Proteomes:UP000006548
RefSeq:NP_180439.1scanprosite:PS00028SMART:SM00355SMR:Q9SI97
STRING:3702.AT2G28710.1SUPFAM:SSF57667TAIR:AT2G28710UniGene:At.66263
UniProt:Q9SI97
Coordinates (TAIR10) chr2:+:12322974..12323444
Molecular Weight (calculated) 16731.40 Da
IEP (calculated) 10.49
GRAVY (calculated) -0.46
Length 156 amino acids
Sequence (TAIR10)
(BLAST)
001: MERGRSDMEM INNMANCLIL LSKAHQNDTK SRVFACKTCN KEFPSFQALG GHRASHRRSA ALEGHAPPSP KRVKPVKHEC PICGAEFAVG QALGGHMRKH
101: RGGSGGGGGR SLAPATAPVT MKKSGGGNGK RVLCLDLNLT PLENEDLKLE LGRFIF
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)