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AT2G28670.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
extracellular 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Disease resistance-responsive (dirigent-like protein) family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Disease resistance-responsive (dirigent-like protein) family protein; FUNCTIONS IN: molecular_function unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Plant disease resistance response protein (InterPro:IPR004265); BEST Arabidopsis thaliana protein match is: Disease resistance-responsive (dirigent-like protein) family protein (TAIR:AT1G07730.2); Has 149387 Blast hits to 52063 proteins in 2552 species: Archae - 249; Bacteria - 55746; Metazoa - 39096; Fungi - 9081; Plants - 13630; Viruses - 2093; Other Eukaryotes - 29492 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IJA2eggNOG:ENOG410Y9YIEMBL:AC007171EMBL:BT002889EMBL:BT015768EMBL:CP002685EnsemblPlants:AT2G28670
EnsemblPlants:AT2G28670.1entrez:817416GeneID:817416Genevisible:Q9SIA8GO:GO:0009809GO:GO:0010345GO:GO:0048046
GO:GO:0048226hmmpanther:PTHR21495hmmpanther:PTHR21495:SF41HOGENOM:HOG000237511InParanoid:Q9SIA8InterPro:IPR004265KEGG:ath:AT2G28670
OMA:VSESHIGPaxDb:Q9SIA8Pfam:PF03018Pfam:Q9SIA8PhylomeDB:Q9SIA8PIR:G84687PRIDE:Q9SIA8
PRO:PR:Q9SIA8ProteinModelPortal:Q9SIA8Proteomes:UP000006548RefSeq:NP_001154539.1RefSeq:NP_180435.1SMR:Q9SIA8STRING:3702.AT2G28670.1
TAIR:AT2G28670TMHMM:TMhelixUniGene:At.27583UniGene:At.75639UniProt:Q9SIA8
Coordinates (TAIR10) chr2:-:12300380..12301723
Molecular Weight (calculated) 41509.30 Da
IEP (calculated) 4.44
GRAVY (calculated) 0.20
Length 447 amino acids
Sequence (TAIR10)
(BLAST)
001: MAGQKILSLL VIALVVTFAA AARLLDEENA FSATTTTLGS GSGSTGIGFG AGTGSSGSGS TGFGFGAGSG SSGSGSTGSG LGAGTGSIPS SGSGPGLLPT
101: ASSVPGSLAG GGSGSLPTTG SATGAGAGTG SALGGGPGAG SALGGGAGAG PALGGGAGAG PALGGGAGAG SALGGGGAGA GPALGGGGAG AGPALGGGVA
201: GSGSALGGGA SAGPDNTLVF FMHDILGGSN PTARAVTGVV ANPALSGQLP FAKPNGANLP VSNGVPSNNN NNGIVNNNNV PFLVGLGGTT ANILQNNNNG
301: NNILNGFPVA SGGQLPSGSA LQMLMFGTMT VIDDELTEGH ELGSGLLGKA QGYYVASAID GTSQTMAFTA MFESGGYEDS ISFFGVLRTA VSESHIGVMG
401: GTGKYVNARG FAILKTFTGS SGTQQNQPHQ FTDGLETVVE CTVYLSY
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)