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AT2G28610.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Homeodomain-like superfamily protein
Curator
Summary (TAIR10)
Encodes a homeodomain containing protein that regulates lateral axis-dependent development of Arabidopsis flowers and is required for cell proliferation. It is expressed in a restricted number of L1 cells at the lateral regions of flower primordia, floral organ primordia, and young leaf primordia.
Computational
Description (TAIR10)
PRESSED FLOWER (PRS); CONTAINS InterPro DOMAIN/s: Homeobox (InterPro:IPR001356), Homeodomain-like (InterPro:IPR009057); BEST Arabidopsis thaliana protein match is: WUSCHEL related homeobox 1 (TAIR:AT3G18010.1); Has 1413 Blast hits to 1080 proteins in 151 species: Archae - 0; Bacteria - 53; Metazoa - 299; Fungi - 18; Plants - 657; Viruses - 6; Other Eukaryotes - 380 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410J1SKeggNOG:ENOG410YQBKEMBL:AB058920EMBL:AC007171EMBL:AY251397EMBL:CP002685EnsemblPlants:AT2G28610
EnsemblPlants:AT2G28610.1entrez:817410ExpressionAtlas:Q9SIB4Gene3D:1.10.10.60GeneID:817410Genevisible:Q9SIB4GO:GO:0003677
GO:GO:0003700GO:GO:0005634GO:GO:0006351GO:GO:0008283GO:GO:0009908GO:GO:0009943GO:GO:0009947
GO:GO:0010865GO:GO:0030154GO:GO:0048513Gramene:AT2G28610.1hmmpanther:PTHR24326hmmpanther:PTHR24326:SF115InParanoid:Q9SIB4
InterPro:IPR001356InterPro:IPR009057KEGG:ath:AT2G28610ncoils:CoilOMA:GRDWMMMPaxDb:Q9SIB4Pfam:PF00046
Pfam:Q9SIB4Pfscan:PS50071PIR:A84687PRIDE:Q9SIB4PRO:PR:Q9SIB4PROSITE:PS50071ProteinModelPortal:Q9SIB4
Proteomes:UP000006548RefSeq:NP_180429.1SMART:SM00389STRING:3702.AT2G28610.1SUPFAM:SSF46689TAIR:AT2G28610tair10-symbols:PRS
tair10-symbols:PRS1tair10-symbols:WOX3UniGene:At.28458UniProt:Q1PEZ2UniProt:Q9SIB4
Coordinates (TAIR10) chr2:+:12262115..12263286
Molecular Weight (calculated) 28135.90 Da
IEP (calculated) 9.53
GRAVY (calculated) -0.75
Length 244 amino acids
Sequence (TAIR10)
(BLAST)
001: MSPVASTRWC PTPEQLMILE EMYRSGIRTP NAVQIQQITA HLAFYGRIEG KNVFYWFQNH KARDRQKLRK KLAKQLHQQQ HQLQLQLQQI KPKPISSMIS
101: QPVNKNIIDH HNPYHHHHHN HHHNHHRPYD HMSFDCCSHP SPMCLPHQGT GVGEAPSKVM NEYYCTKSGA EEILMQKSIT GPNSSYGRDW MMMMDMGPRP
201: SYPSSSSSPI SCCNMMMSSP KIPLKTLELF PISSINSKQD STKL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)