AT2G28605.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plastid 1.000 ASURE: plastid What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Photosystem II reaction center PsbP family protein | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Encodes a PsbP domain-OEC23 like protein localized in thylakoid (peripheral-lumenal side). | ||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
Photosystem II reaction center PsbP family protein; FUNCTIONS IN: calcium ion binding; INVOLVED IN: photosynthesis; LOCATED IN: thylakoid, chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Photosystem II oxygen evolving complex protein PsbP (InterPro:IPR002683), Mog1/PsbP/DUF1795, alpha/beta/alpha sandwich (InterPro:IPR016124), Mog1/PsbP, alpha/beta/alpha sandwich (InterPro:IPR016123); Has 131 Blast hits to 131 proteins in 58 species: Archae - 0; Bacteria - 54; Metazoa - 0; Fungi - 0; Plants - 71; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr2:+:12254911..12255689 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 25802.70 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 9.05 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.21 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 232 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MWSQSFLGSA PKLCLFSSSL PPFSHHKIHK FFCFAQNPSS TVSINLSKRH LNLSILTLFF NGFLLDNKAK SMEELQRYTD SNNGFTLLIP SSYTKVEKAG 101: ANALFEELNN GSNNIGVVVS PVRIKSLDQF GSPQFVADKL INAEKRKEST KEAEVVSVGE RAGLGQQVYE FEYKIDSTRG GIKRVFSAAF VSSNKLYLLN 201: VVHSDKPENP LDSSTRMSLE QVLHSFDALP LT |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)