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AT2G28605.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plastid 1.000
ASURE: plastid
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Photosystem II reaction center PsbP family protein
Curator
Summary (TAIR10)
Encodes a PsbP domain-OEC23 like protein localized in thylakoid (peripheral-lumenal side).
Computational
Description (TAIR10)
Photosystem II reaction center PsbP family protein; FUNCTIONS IN: calcium ion binding; INVOLVED IN: photosynthesis; LOCATED IN: thylakoid, chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Photosystem II oxygen evolving complex protein PsbP (InterPro:IPR002683), Mog1/PsbP/DUF1795, alpha/beta/alpha sandwich (InterPro:IPR016124), Mog1/PsbP, alpha/beta/alpha sandwich (InterPro:IPR016123); Has 131 Blast hits to 131 proteins in 58 species: Archae - 0; Bacteria - 54; Metazoa - 0; Fungi - 0; Plants - 71; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).
Protein Annotations
BioGrid:2759eggNOG:ENOG410IW6IeggNOG:ENOG4111U4CEMBL:AC007171EMBL:AY072442EMBL:AY128884EMBL:CP002685
EnsemblPlants:AT2G28605EnsemblPlants:AT2G28605.1entrez:817409Gene3D:3.40.1000.10GeneID:817409Genevisible:Q8VY52GO:GO:0005509
GO:GO:0009507GO:GO:0009543GO:GO:0009579GO:GO:0009654GO:GO:0015979GO:GO:0019898Gramene:AT2G28605.1
hmmpanther:PTHR31407hmmpanther:PTHR31407:SF3HOGENOM:HOG000006006InParanoid:Q8VY52InterPro:IPR002683InterPro:IPR016123KEGG:ath:AT2G28605
OMA:QRYTDSNPaxDb:Q8VY52Pfam:PF01789Pfam:Q8VY52PhylomeDB:Q8VY52PRIDE:Q8VY52PRO:PR:Q8VY52
ProteinModelPortal:Q8VY52Proteomes:UP000006548RefSeq:NP_850123.1SMR:Q8VY52STRING:3702.AT2G28605.1SUPFAM:SSF55724TAIR:AT2G28605
UniGene:At.38598UniProt:Q8VY52
Coordinates (TAIR10) chr2:+:12254911..12255689
Molecular Weight (calculated) 25802.70 Da
IEP (calculated) 9.05
GRAVY (calculated) -0.21
Length 232 amino acids
Sequence (TAIR10)
(BLAST)
001: MWSQSFLGSA PKLCLFSSSL PPFSHHKIHK FFCFAQNPSS TVSINLSKRH LNLSILTLFF NGFLLDNKAK SMEELQRYTD SNNGFTLLIP SSYTKVEKAG
101: ANALFEELNN GSNNIGVVVS PVRIKSLDQF GSPQFVADKL INAEKRKEST KEAEVVSVGE RAGLGQQVYE FEYKIDSTRG GIKRVFSAAF VSSNKLYLLN
201: VVHSDKPENP LDSSTRMSLE QVLHSFDALP LT
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)