AT2G28600.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : P-loop containing nucleoside triphosphate hydrolases superfamily protein | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
P-loop containing nucleoside triphosphate hydrolases superfamily protein; FUNCTIONS IN: nucleic acid binding, ATP binding, ATP-dependent helicase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545); BEST Arabidopsis thaliana protein match is: DEAD box RNA helicase family protein (TAIR:AT5G14610.2); Has 18076 Blast hits to 18074 proteins in 2559 species: Archae - 105; Bacteria - 11263; Metazoa - 1996; Fungi - 1558; Plants - 1139; Viruses - 1; Other Eukaryotes - 2014 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr2:+:12251845..12254672 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 55457.70 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 9.47 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.34 | ||||||||||||||||||||||||||||||||
| Length | 502 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MAKGDDNVQR KKNKVTRKKM SRKNDTATVS ARIAAIIAAK KRRKSGKRSM CQGMCFTLPT LEDPFNERQG KADITKKKKK KKKVKSREDK KPSPMSIEGV 101: EKMDGPPKFL MLNLNEIESS FRKDITYSEQ HDKSLFTSSW GIEFWKCYSS GNDILDTSGM SSTVEQIAWI VSTAADAIAR REKDEVEEEE ELLGNSPFLL 201: YLVPSQSKAS QVRSVCKALK GIGIHTVSLH QGAPLDHQIS GLKSVEPEFI VATPERLLEI VTLKGVDISN VSLLVIDELG SLCSGGYLNA VKSIKQAISS 301: KHQTIVFNNS FSASIIPAVQ SFLGGSVNRV TVNESVASQG SCITQTVSVC ASEEKKLQKF AKHLDSSSSK LIYIVTKEES FKKIMAILKL KGISVSTSSD 401: SKLSEVKKSR KPVAHLIDFE QLDTTVMRDS ETVLLPDFFP SIEIYTQILT SMARESAHGV LHSYITEKDA ASYQAGPLVN VLENCGQNVP DRWRNMDVAM 501: SD |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)