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AT2G28550.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : related to AP2.7
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
related to AP2.7 (RAP2.7); CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor/ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: target of early activation tagged (EAT) 2 (TAIR:AT5G60120.1); Has 4895 Blast hits to 4529 proteins in 234 species: Archae - 0; Bacteria - 28; Metazoa - 0; Fungi - 0; Plants - 4802; Viruses - 9; Other Eukaryotes - 56 (source: NCBI BLink).
Protein Annotations
BioGrid:2753eggNOG:ENOG410II4NeggNOG:ENOG410YD13EMBL:AC006587EMBL:AF003100EMBL:AF325074EMBL:AY050815
EMBL:AY091418EMBL:CP002685EnsemblPlants:AT2G28550EnsemblPlants:AT2G28550.1entrez:817403ExpressionAtlas:Q9SK03Gene3D:3.30.730.10
GeneID:817403Genevisible:Q9SK03GO:GO:0003677GO:GO:0003700GO:GO:0005634GO:GO:0006351GO:GO:0007275
GO:GO:0009873hmmpanther:PTHR32467hmmpanther:PTHR32467:SF29HOGENOM:HOG000293136InParanoid:Q9SK03IntAct:Q9SK03InterPro:IPR001471
InterPro:IPR016177InterPro:IPR031112PANTHER:PTHR32467PaxDb:Q9SK03Pfam:PF00847Pfam:Q9SK03Pfscan:PS51032
PhylomeDB:Q9SK03PIR:C84686PRIDE:Q9SK03PRO:PR:Q9SK03PROSITE:PS51032ProteinModelPortal:Q9SK03Proteomes:UP000006548
RefSeq:NP_565674.1RefSeq:NP_973553.1SMART:SM00380SMR:Q9SK03STRING:3702.AT2G28550.3SUPFAM:SSF54171TAIR:AT2G28550
tair10-symbols:RAP2.7tair10-symbols:TOE1UniGene:At.14009UniProt:Q9SK03
Coordinates (TAIR10) chr2:-:12226168..12228251
Molecular Weight (calculated) 49431.70 Da
IEP (calculated) 7.26
GRAVY (calculated) -0.81
Length 449 amino acids
Sequence (TAIR10)
(BLAST)
001: MLDLNLNADS PESTQYGGDS YLDRQTSDNS AGNRVEESGT STSSVINADG DEDSCSTRAF TLSFDILKVG SSSGGDESPA ASASVTKEFF PVSGDCGHLR
101: DVEGSSSSRN WIDLSFDRIG DGETKLVTPV PTPAPVPAQV KKSRRGPRSR SSQYRGVTFY RRTGRWESHI WDCGKQVYLG GFDTAHAAAR AYDRAAIKFR
201: GVDADINFTL GDYEEDMKQV QNLSKEEFVH ILRRQSTGFS RGSSKYRGVT LHKCGRWEAR MGQFLGKKAY DKAAINTNGR EAVTNFEMSS YQNEINSESN
301: NSEIDLNLGI SLSTGNAPKQ NGRLFHFPSN TYETQRGVSL RIDNEYMGKP VNTPLPYGSS DHRLYWNGAC PSYNNPAEGR ATEKRSEAEG MMSNWGWQRP
401: GQTSAVRPQP PGPQPPPLFS VAAASSGFSH FRPQPPNDNA TRGYFYPHP
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)