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AT2G28510.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Dof-type zinc finger DNA-binding family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Dof-type zinc finger DNA-binding family protein; FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: nucleolus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, Dof-type (InterPro:IPR003851); BEST Arabidopsis thaliana protein match is: TARGET OF MONOPTEROS 6 (TAIR:AT5G60200.1); Has 1531 Blast hits to 1461 proteins in 73 species: Archae - 0; Bacteria - 1; Metazoa - 1; Fungi - 8; Plants - 1087; Viruses - 0; Other Eukaryotes - 434 (source: NCBI BLink).
Protein Annotations
DNASU:817399eggNOG:ENOG410IW0XeggNOG:ENOG410YM1YEMBL:AC006587EMBL:AY070421EMBL:AY085635EMBL:BT001954
EMBL:CP002685EnsemblPlants:AT2G28510EnsemblPlants:AT2G28510.1entrez:817399GeneID:817399Genevisible:Q8LE43GO:GO:0003677
GO:GO:0003700GO:GO:0005730GO:GO:0006351GO:GO:0006355GO:GO:0046872Gramene:AT2G28510.1hmmpanther:PTHR31992
hmmpanther:PTHR31992:SF8HOGENOM:HOG000112244InParanoid:Q8LE43InterPro:IPR003851KEGG:ath:AT2G28510OMA:YGFMSGNPaxDb:Q8LE43
Pfam:PF02701Pfam:Q8LE43Pfscan:PS50884PhylomeDB:Q8LE43PIR:G84685PRIDE:Q8LE43PRO:PR:Q8LE43
ProDom:PD007478PROSITE:PS01361PROSITE:PS50884ProteinModelPortal:Q8LE43Proteomes:UP000006548RefSeq:NP_565673.1scanprosite:PS01361
STRING:3702.AT2G28510.1TAIR:AT2G28510UniGene:At.28359UniProt:Q8LE43
Coordinates (TAIR10) chr2:-:12199383..12200627
Molecular Weight (calculated) 31783.80 Da
IEP (calculated) 8.04
GRAVY (calculated) -0.85
Length 288 amino acids
Sequence (TAIR10)
(BLAST)
001: MDPEQEISNE TLETILVSST KGSNNNNKKM EEEMKKKVSR GELGGEAQNC PRCESPNTKF CYYNNYSLSQ PRYFCKSCRR YWTKGGTLRN VPVGGGCRRN
101: KRSSSSAFSK NNNNKSINFH TDPLQNPLIT GMPPSSFGYD HSIDLNLAFA TLQKHHLSSQ ATTPSFGFGG DLSIYGNSTN DVGIFGGQNG TYNNSLCYGF
201: MSGNGNNNQN EIKMASTLGM SLEGNERKQE NVNNNNNNSE NPSKVFWGFP WQMTGDSAGV VPEIDPGRES WNGMVSSWNN GLLNTPLV
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)