AT2G28440.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:extracellular 0.992 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : proline-rich family protein | ||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
proline-rich family protein; LOCATED IN: endomembrane system; EXPRESSED IN: male gametophyte, flower, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis; Has 177702 Blast hits to 74235 proteins in 2752 species: Archae - 323; Bacteria - 50033; Metazoa - 56215; Fungi - 26362; Plants - 14116; Viruses - 3662; Other Eukaryotes - 26991 (source: NCBI BLink). | ||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr2:+:12161226..12162032 | ||||||||||||||||||||||||
| Molecular Weight (calculated) | 27742.40 Da | ||||||||||||||||||||||||
| IEP (calculated) | 3.62 | ||||||||||||||||||||||||
| GRAVY (calculated) | -0.67 | ||||||||||||||||||||||||
| Length | 268 amino acids | ||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MAKKLCFIVM LSICLLIFDF AGAQEESPSP AAVSPGREPS TDSPLSPSSS PEEDSPLSPS SSPEEDSPLP PSSSPEEDSP LAPSSSPEVD SPLAPSSSPE 101: VDSPQPPSSS PEADSPLPPS SSPEANSPQS PASSPKPESL ADSPSPPPPP PQPESPSSPS YPEPAPVPAP SDDDSDDDPE PETEYFPSPA PSPELGMAQD 201: IKASDAAGEE LNDERGEDYG MSGLEKAGIA IGTILGVGAI VIGALVYKKR RDNMTRARYT YFTEGEFL |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)