suba logo
AT2G28440.1
Subcellular Consensus
(Prediction and Experimental)

min: heatmap :max

.
SUBAcon:
extracellular 0.893
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : proline-rich family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
proline-rich family protein; LOCATED IN: endomembrane system; EXPRESSED IN: male gametophyte, flower, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis; Has 177702 Blast hits to 74235 proteins in 2752 species: Archae - 323; Bacteria - 50033; Metazoa - 56215; Fungi - 26362; Plants - 14116; Viruses - 3662; Other Eukaryotes - 26991 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410JPE8eggNOG:ENOG410Z7VWEMBL:AC006283EMBL:CP002685EMBL:DQ056548EnsemblPlants:AT2G28440EnsemblPlants:AT2G28440.1
entrez:817392GeneID:817392GO:GO:0016021Gramene:AT2G28440.1KEGG:ath:AT2G28440OMA:PQPEIPIPIR:H84684
Proteomes:UP000006548RefSeq:NP_180411.1STRING:3702.AT2G28440.1TAIR:AT2G28440TMHMM:TMhelixUniGene:At.44990UniGene:At.66390
UniProt:Q9SKM6
Coordinates (TAIR10) chr2:+:12161226..12162032
Molecular Weight (calculated) 27742.40 Da
IEP (calculated) 3.62
GRAVY (calculated) -0.67
Length 268 amino acids
Sequence (TAIR10)
(BLAST)
001: MAKKLCFIVM LSICLLIFDF AGAQEESPSP AAVSPGREPS TDSPLSPSSS PEEDSPLSPS SSPEEDSPLP PSSSPEEDSP LAPSSSPEVD SPLAPSSSPE
101: VDSPQPPSSS PEADSPLPPS SSPEANSPQS PASSPKPESL ADSPSPPPPP PQPESPSSPS YPEPAPVPAP SDDDSDDDPE PETEYFPSPA PSPELGMAQD
201: IKASDAAGEE LNDERGEDYG MSGLEKAGIA IGTILGVGAI VIGALVYKKR RDNMTRARYT YFTEGEFL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)