suba logo
AT2G28400.1
Subcellular Consensus
(Prediction and Experimental)

min: heatmap :max

.
SUBAcon:
nucleus 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Protein of unknown function, DUF584
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Protein of unknown function, DUF584; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF584 (InterPro:IPR007608); BEST Arabidopsis thaliana protein match is: Protein of unknown function, DUF584 (TAIR:AT3G45210.1); Has 318 Blast hits to 318 proteins in 20 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 318; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410JDUCeggNOG:ENOG410Z0A4EMBL:AC006283EMBL:AY070388EMBL:AY122954EMBL:CP002685EnsemblPlants:AT2G28400
EnsemblPlants:AT2G28400.1entrez:817388GeneID:817388Gramene:AT2G28400.1hmmpanther:PTHR33083hmmpanther:PTHR33083:SF9HOGENOM:HOG000238243
InterPro:IPR007608KEGG:ath:AT2G28400OMA:NTIFKIRPfam:PF04520PhylomeDB:Q9SKN0PIR:D84684Proteomes:UP000006548
RefSeq:NP_180407.1STRING:3702.AT2G28400.1TAIR:AT2G28400UniGene:At.28147UniProt:Q9SKN0
Coordinates (TAIR10) chr2:-:12148513..12149001
Molecular Weight (calculated) 18055.80 Da
IEP (calculated) 6.68
GRAVY (calculated) -0.77
Length 162 amino acids
Sequence (TAIR10)
(BLAST)
001: MATSKCYYPR PSHRFFTTDQ HVTATSDFEL DEWDLFNTGS DSSSSFSFSD LTITSGRTGT NRQIHGGSDS GKAASSLPVN VPDWSKILGD ESRRQRKISN
101: EEEVDGDEIL CGEGTRRVPP HELLANRRMA SFSVHEGAGR TLKGRDLSRV RNTIFKIRGI ED
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)