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AT2G28380.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
cytosol 1.000
ASURE: cytosol
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : dsRNA-binding protein 2
Curator
Summary (TAIR10)
Encodes a cytoplasmic dsRNA-binding protein.
Computational
Description (TAIR10)
dsRNA-binding protein 2 (DRB2); CONTAINS InterPro DOMAIN/s: Double-stranded RNA-binding (InterPro:IPR001159), Double-stranded RNA-binding-like (InterPro:IPR014720); BEST Arabidopsis thaliana protein match is: dsRNA-binding protein 5 (TAIR:AT5G41070.1); Has 1035 Blast hits to 903 proteins in 271 species: Archae - 2; Bacteria - 346; Metazoa - 166; Fungi - 72; Plants - 365; Viruses - 9; Other Eukaryotes - 75 (source: NCBI BLink).
Protein Annotations
BioGrid:2736eggNOG:ENOG410IGABeggNOG:ENOG410ZZN4EMBL:AC006283EMBL:AY034976EMBL:AY062965EMBL:CP002685
EnsemblPlants:AT2G28380EnsemblPlants:AT2G28380.1entrez:817386Gene3D:3.30.160.20GeneID:817386Genevisible:Q9SKN2GO:GO:0003725
GO:GO:0005737GO:GO:0035196GO:GO:0070919Gramene:AT2G28380.1hmmpanther:PTHR10910hmmpanther:PTHR10910:SF94HOGENOM:HOG000243232
InParanoid:Q9SKN2IntAct:Q9SKN2InterPro:IPR014720KEGG:ath:AT2G28380OMA:QPRNEPLPaxDb:Q9SKN2Pfam:PF00035
Pfam:Q9SKN2Pfscan:PS50137PhylomeDB:Q9SKN2PIR:B84684PRIDE:Q9SKN2PRO:PR:Q9SKN2PROSITE:PS50137
ProteinModelPortal:Q9SKN2Proteomes:UP000006548RefSeq:NP_565672.1SMART:SM00358SMR:Q9SKN2STRING:3702.AT2G28380.1SUPFAM:SSF54768
TAIR:AT2G28380tair10-symbols:DRB2UniGene:At.13732UniProt:Q9SKN2
Coordinates (TAIR10) chr2:-:12134098..12135915
Molecular Weight (calculated) 47442.70 Da
IEP (calculated) 9.75
GRAVY (calculated) -0.41
Length 434 amino acids
Sequence (TAIR10)
(BLAST)
001: MYKNQLQELA QRSCFNLPSY TCIREGPDHA PRFKATVNFN GEIFESPQYC STLRQAEHSA AEVALNALSN RGPSHSLAAR ILDETGVYKN LLQEIAQRVG
101: APLPRYTTFR SGLGHQPVFT GTVELAGITF TGDPAKNKKQ AEKNAAMAAW SSLKQLAKET SSSMPEPENI DELEQVIIAR ALINYRIKEN IGTGSSSSAP
201: VPFAKKFFMQ NLRPTSPQPS PATTSRILPF ICPKQPSRSS RSSLAATSGI DRIMAAALES RSYQRPQQRF ANPPYVPMRQ FRSQCHGMAP PVTIRTAVPV
301: FSAPPMPPPP CTNNTQLPSS VYVPSLMRTA PPVRIAPPVT IRTAVPVFAS APPVRIRTAV KPTVEAGETR ISSVQEKESI PVLPDSLEIG VEGSTITITD
401: CEKTASKETE RAEFKDSSKG EPETARERLE NLKI
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)