AT2G28360.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 0.942 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : SIT4 phosphatase-associated family protein | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
SIT4 phosphatase-associated family protein; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: SIT4 phosphatase-associated protein (InterPro:IPR007587); BEST Arabidopsis thaliana protein match is: SIT4 phosphatase-associated family protein (TAIR:AT1G07990.1); Has 1543 Blast hits to 1191 proteins in 250 species: Archae - 2; Bacteria - 177; Metazoa - 564; Fungi - 334; Plants - 115; Viruses - 14; Other Eukaryotes - 337 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr2:-:12124604..12129879 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 87512.50 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 4.20 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.34 | ||||||||||||||||||||||||||||||||
| Length | 788 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MFWKLASLSA SSPVESILDK DSFTLEELLD EEEIIQECKA LNSRLINFLR EKTQVEKLLR YVVEEPEDDA DSKRAFKFPF ISCEIFTCEI DVILKTLVED 101: EKLMDLLFGF LEPNRPHSAL LAGYFGKVVI CLMIRKTSAL MSYIKGHGNV FSQLVDLIGI TSIMEVLVRL VGADDHVYPN FPDVMRYLAD SDLLEMIVDK 201: LNPSSPPEVQ ANAAETLCAI TRNAPSALAT KLSSPGFVSR IFGHAIEDSH SKSGLVHSLT VCISLLDPRR SGASSPFFNS YRGQNMFESP VPVTQETIGA 301: MLPKLGDMLV LLSVTSDSKV LPTTYGELRP PLGKHRLKIV EFIAVLLKSG NEAAGTELAI SGTIKRILEL FFEYPYNNAL HHQVESIILS CLENKSEIMV 401: NHILQDCNLI SKILSSDKDS ALSGDNLPTV VATGKKPPRV GYVGHITRLW NKLVQLSDSN ALIKTSLQEN SEWNEWQSSV LKERNTVENV YRWACGRPTT 501: LQDRTRDSDE EDRDYDVAAL ANNLNQAFNY RIYGNEDNEE DQNALNALDR DDSDSYFDDE SAEVVISSLR LGDDQGSLLT NSDWFTFQDD RFSNPTSDTM 601: IEDVNMNETT NANDSSSSDD ELLVEEEEDD DLTEKSKNIS PSNLSTSDST SINISSENND EPSDMQVTSS SLNPFIDVPM LDVKPEPVIP NSSPTSSESS 701: SLGHKSPSSP AVRALFEEDV EFVGVEPEGT EKAMDQALKE GIVGEAGPLK RNIVQKVPEN ENQAENSGVT EFNDANFWRV DQEVTVLE |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)