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AT2G28130.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IKKHeggNOG:ENOG410YD3XEMBL:BT026499EMBL:CP002685
EnsemblPlants:AT2G28130EnsemblPlants:AT2G28130.1entrez:817359GeneID:817359
Gramene:AT2G28130.1hmmpanther:PTHR37212hmmpanther:PTHR37212:SF1HOGENOM:HOG000237701
KEGG:ath:AT2G28130OMA:SACDFWCPhylomeDB:Q0V7S1Proteomes:UP000006548
RefSeq:NP_180380.3STRING:3702.AT2G28130.1TAIR:AT2G28130UniGene:At.13308
UniProt:Q0V7S1
Coordinates (TAIR10) chr2:+:11988823..11991397
Molecular Weight (calculated) 51921.50 Da
IEP (calculated) 4.79
GRAVY (calculated) -0.11
Length 458 amino acids
Sequence (TAIR10)
(BLAST)
001: MDLDGPLDFE NEDPLVNPPT IIEKRKKVIG LDDLLSDFYK EKSKVIDKVN KKRKVSKVYH SDDDEQGQVD KLSQCVVECQ NQMNEIADEE ENQEWGLSMF
101: GDQKTPIPSL LVDLDSCCLL KEFMNNQLNL VVGLTVDEGT TFIEGLLVNG WLTRLIMTCG RVEKFICKWT LNILLYSSKE DLRSSACDFW CSILLSQNKV
201: NGASVEIYWL PNYQELKEAL ESYGFRISLS HSQDVELAEA DSECQGPPQN IRAWLTLVTT CCQFRCKKPI FTTSQVEQIA EILVSLLLDR SLLGLSILLQ
301: ECLISVIGSF KEEEWISSCK KIANSLASRV PQDINCLRVV ESVSGVDARS KHLRSSIAHQ MLVVLLDHKD SDENLLSSLM SINVKERSCN LFKMYIFLVL
401: AENWLFSSTL VEAKPVLRDM WAVFLRNCSC QINSTDLRSY ASKVRTRAAY LLQGCSSN
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)