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AT2G28100.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
extracellular 1.000
ASURE: extracellular
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:16356755 (2006): extracellular region
  • PMID:15694452 (2005): extracellular region
  • PMID:15539469 (2004): plant-type vacuole
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : alpha-L-fucosidase 1
Curator
Summary (TAIR10)
Encodes a protein with &#945;-fucosidase activity. The activity was assessed on 2'-fucosyl-lactitol. AtFUC1 was not able to act on XXFG substrates, at least when heterologously expressed in <i>Pichia pastoris</i>. The enzyme has been postulated to act on fucosylated substrates other than xyloglucan oligosaccharides. was shown (<i>Pichia pastoris</i>) to hydrolyze fucose in 3- and 4-linkage , hence was characterized as alpha-L-3,4-fucosidase
Computational
Description (TAIR10)
alpha-L-fucosidase 1 (FUC1); FUNCTIONS IN: alpha-L-fucosidase activity; INVOLVED IN: glycoprotein catabolic process; LOCATED IN: vacuole; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 29 (InterPro:IPR000933), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781); Has 2006 Blast hits to 1993 proteins in 389 species: Archae - 18; Bacteria - 1470; Metazoa - 203; Fungi - 6; Plants - 70; Viruses - 0; Other Eukaryotes - 239 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT2G28100-MONOMERBioCyc:MetaCyc:AT2G28100-MONOMERCAZy:GH29EC:3.2.1.51eggNOG:COG3669eggNOG:KOG3340EMBL:AC005851
EMBL:AK119039EMBL:CP002685EnsemblPlants:AT2G28100EnsemblPlants:AT2G28100.1entrez:817355Gene3D:2.60.120.260Gene3D:3.20.20.80
GeneID:817355Genevisible:Q8GW72GO:GO:0004560GO:GO:0005773GO:GO:0005975GO:GO:0006516GO:GO:0048046
Gramene:AT2G28100.1hmmpanther:PTHR10030hmmpanther:PTHR10030:SF27HOGENOM:HOG000221495InParanoid:Q8GW72IntAct:Q8GW72InterPro:IPR000933
InterPro:IPR008979InterPro:IPR013781InterPro:IPR017853iPTMnet:Q8GW72KEGG:ath:AT2G28100KO:K01206OMA:KVRVMIT
PANTHER:PTHR10030PaxDb:Q8GW72Pfam:PF01120Pfam:Q8GW72PIR:G84680PRIDE:Q8GW72PRO:PR:Q8GW72
ProteinModelPortal:Q8GW72Proteomes:UP000006548RefSeq:NP_180377.2SMART:SM00812SMR:Q8GW72STRING:3702.AT2G28100.1SUPFAM:SSF49785
SUPFAM:SSF51445TAIR:AT2G28100tair10-symbols:ATFUC1tair10-symbols:FUC1UniGene:At.38664UniGene:At.66367UniProt:Q8GW72
Coordinates (TAIR10) chr2:+:11974803..11976489
Molecular Weight (calculated) 57189.30 Da
IEP (calculated) 5.13
GRAVY (calculated) -0.36
Length 506 amino acids
Sequence (TAIR10)
(BLAST)
001: MNSQITLFFF FFSILSLSQI SNSSSLLKPH PCPILPLPSS QQLQWQLGSM AMFLHFGPNT FTDSEWGTGK ANPSIFNPTH LNASQWVQIA KDSGFSRVIL
101: TAKHHDGFCL WPSEYTDYSV KSSQWRNGAG DVVAELASAA KEAGIGLGLY LSPWDRHEQC YGKTLEYNEF YLSQMTELLT KYGEIKEVWL DGAKGDGEKD
201: MEYFFDTWFS LIHQLQPKAV IFSDAGPDVR WIGDEAGLAG STCWSLFNRT NAKIGDTEPS YSQEGDGYGQ DWVPAECDVS IRPGWFWHAS ESPKPAVQLL
301: DIYYNSVGRN CLFLLNVPPN SSGLISEQDI KVLEEFSEMK NSIFSNNLAR KAFVNSSSIR GDQSSQFGPK NVLEEGLDKY WAPEENQNEW VLYLEFKDLV
401: SFNVLEIREP IHMGQRIASF HLETRKTGSG EWERVVSGTT VGNKRLLRFL NVVESRSLKL VVDKARTDPL ISYLGLYMDK FSGSSRNTTK ITITRTLKEE
501: QQLHDL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)