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AT2G28000.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plastid 1.000
ASURE: plastid
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:27943495 (2017): mitochondrion
  • PMID:26987276 (2016): plastid
  • PMID:26781341 (2016): plasma membrane
  • PMID:25900983 (2015): Golgi
  • PMID:25900983 (2015): plant-type vacuole plant-type vacuole membrane
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
  • PMID:25900983 (2015): Golgi Golgi apparatus Golgi membrane
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:25740923 (2015): plastid
  • PMID:25641898 (2015): plasma membrane
  • PMID:24872594 (2014): plastid plastid stroma
  • PMID:24872594 (2014): plastid plastid envelope
  • PMID:24361574 (2014): plastid plastid stroma
  • PMID:23851315 (2013): plastid
  • PMID:23549413 (2013): plastid plastid stroma
  • PMID:23396599 (2013): nucleus nuclear envelope nuclear inner membrane
  • PMID:22318864 (2012): plasma membrane
  • PMID:21539947 (2011): plastid plastid stroma
  • PMID:21531424 (2011): plastid
  • PMID:21472856 (2011): mitochondrion
  • PMID:21433285 (2011): plasma membrane
  • PMID:20423899 (2010): plastid
  • PMID:20061580 (2010): plastid plastid envelope
  • PMID:20061580 (2010): plastid plastid stroma
  • PMID:19334764 (2009): plasma membrane
  • PMID:19288221 (2010): plastid
  • PMID:18633119 (2008): plastid plastid stroma
  • PMID:18431481 (2008): plastid plastid stroma
  • PMID:18385124 (2008): mitochondrion
  • PMID:17137349 (2006): mitochondrion
  • PMID:16648217 (2006): plastid
  • PMID:16207701 (2006): plastid
  • PMID:15215502 (2004): plant-type vacuole
  • PMID:15028209 (2004): plastid
  • PMID:14729914 (2004): plastid
  • PMID:14671022 (2004): mitochondrion
  • PMID:12938931 (2003): plastid
  • PMID:11826309 (2002): plastid
  • PMID:11743115 (2001): mitochondrion
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : chaperonin-60alpha
Curator
Summary (TAIR10)
Encodes chaperonin-60 alpha, a molecular chaperone involved in Rubisco folding. Mutants display aberrant chloroplast and embryo development.
Computational
Description (TAIR10)
chaperonin-60alpha (CPN60A); FUNCTIONS IN: ATP binding; INVOLVED IN: protein folding, chloroplast organization, embryo development; LOCATED IN: in 8 components; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Chaperonin Cpn60/TCP-1 (InterPro:IPR002423), Chaperonin Cpn60, conserved site (InterPro:IPR018370), Chaperonin Cpn60 (InterPro:IPR001844); BEST Arabidopsis thaliana protein match is: TCP-1/cpn60 chaperonin family protein (TAIR:AT5G18820.1); Has 33896 Blast hits to 33887 proteins in 8716 species: Archae - 792; Bacteria - 21835; Metazoa - 1656; Fungi - 1573; Plants - 797; Viruses - 2; Other Eukaryotes - 7241 (source: NCBI BLink).
Protein Annotations
BioGrid:2694eggNOG:COG0459eggNOG:KOG0356EMBL:AC006929EMBL:AK222126EMBL:AY086555EMBL:BT002441
EMBL:BT008784EMBL:CP002685EMBL:M35597EMBL:U49357EnsemblPlants:AT2G28000EnsemblPlants:AT2G28000.1entrez:817344
Gene3D:1.10.560.10Gene3D:3.50.7.10GeneID:817344Genevisible:P21238GO:GO:0005524GO:GO:0005739GO:GO:0006457
GO:GO:0009507GO:GO:0009570GO:GO:0009579GO:GO:0009658GO:GO:0009793GO:GO:0009941GO:GO:0016020
GO:GO:0022626GO:GO:0042026GO:GO:0048046Gramene:AT2G28000.1HAMAP:MF_00600hmmpanther:PTHR11353hmmpanther:PTHR11353:SF11
HOGENOM:HOG000076290InParanoid:P21238IntAct:P21238InterPro:IPR001844InterPro:IPR002423InterPro:IPR018370InterPro:IPR027409
InterPro:IPR027413iPTMnet:P21238KEGG:ath:AT2G28000ncoils:CoilOMA:RCPLFIVPaxDb:P21238Pfam:P21238
Pfam:PF00118PhylomeDB:P21238PIR:S71235PRIDE:P21238PRINTS:PR00298PRO:PR:P21238PROSITE:PS00296
ProteinModelPortal:P21238Proteomes:UP000006548RefSeq:NP_180367.1scanprosite:PS00296SMR:P21238STRING:3702.AT2G28000.1SUPFAM:SSF48592
SUPFAM:SSF52029SUPFAM:SSF54849SWISS-2DPAGE:P21238SwissPalm:P21238TAIR:AT2G28000tair10-symbols:CH-CPN60Atair10-symbols:CPN60A
tair10-symbols:SLPTIGRfam:TIGR02348TIGRFAMs:TIGR02348UniGene:At.24154UniGene:At.67332UniProt:P21238
Coordinates (TAIR10) chr2:+:11926603..11929184
Molecular Weight (calculated) 62075.60 Da
IEP (calculated) 4.82
GRAVY (calculated) 0.00
Length 586 amino acids
Sequence (TAIR10)
(BLAST)
001: MASANALSSA SVLCSSRQSK LGGGNQQQGQ RVSYNKRTIR RFSVRANVKE IAFDQHSRAA LQAGIDKLAD CVGLTLGPRG RNVVLDEFGS PKVVNDGVTI
101: ARAIELPNAM ENAGAALIRE VASKTNDSAG DGTTTASILA REIIKHGLLS VTSGANPVSL KRGIDKTVQG LIEELQKKAR PVKGRDDIRA VASISAGNDD
201: LIGSMIADAI DKVGPDGVLS IESSSSFETT VEVEEGMEID RGYISPQFVT NPEKLLAEFE NARVLITDQK ITAIKDIIPI LEKTTQLRAP LLIIAEDVTG
301: EALATLVVNK LRGVLNVVAV KAPGFGERRK AMLQDIAILT GAEYLAMDMS LLVENATIDQ LGIARKVTIS KDSTTLIADA ASKDELQARI AQLKKELFET
401: DSVYDSEKLA ERIAKLSGGV AVIKVGAATE TELEDRKLRI EDAKNATFAA IEEGIVPGGG AALVHLSTVI PAIKETFEDA DERLGADIVQ KALLSPAALI
501: AQNAGVEGEV VVEKIMFSDW ENGYNAMTDT YENLFEAGVI DPAKVTRCAL QNAASVAGMV LTTQAIVVDK PKPKAPAAAA PEGLMV
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)