suba logo
AT2G27990.1
Subcellular Consensus
(Prediction and Experimental)

min: heatmap :max

.
SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : BEL1-like homeodomain 8
Curator
Summary (TAIR10)
Encodes a BEL1-like homeobox gene that functions together with PNY in meristem maintenance by regulating the allocation process during vegetative and reproductive development. Both gene products are required for the competence of the SAM to respond properly to floral inductive signals.
Computational
Description (TAIR10)
BEL1-like homeodomain 8 (BLH8); CONTAINS InterPro DOMAIN/s: Homeobox (InterPro:IPR001356), Homeodomain-like (InterPro:IPR009057), POX (InterPro:IPR006563), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: POX (plant homeobox) family protein (TAIR:AT5G02030.1); Has 5076 Blast hits to 5073 proteins in 336 species: Archae - 0; Bacteria - 0; Metazoa - 2093; Fungi - 319; Plants - 2481; Viruses - 0; Other Eukaryotes - 183 (source: NCBI BLink).
Protein Annotations
BioGrid:2693eggNOG:ENOG410XPMQeggNOG:KOG0773EMBL:AC006929EMBL:AK119153EMBL:BT005921EMBL:CP002685
EnsemblPlants:AT2G27990EnsemblPlants:AT2G27990.1entrez:817343Gene3D:1.10.10.60GeneID:817343Genevisible:Q9SJJ3GO:GO:0003677
GO:GO:0003700GO:GO:0005634GO:GO:0006351GO:GO:0007389GO:GO:0010076GO:GO:0010077GO:GO:0010223
GO:GO:0010228GO:GO:0010229GO:GO:0048645GO:GO:0080006Gramene:AT2G27990.1hmmpanther:PTHR11850hmmpanther:PTHR11850:SF82
HOGENOM:HOG000095234InParanoid:Q9SJJ3IntAct:Q9SJJ3InterPro:IPR001356InterPro:IPR006563InterPro:IPR008422InterPro:IPR009057
KEGG:ath:AT2G27990OMA:CISYASKPaxDb:Q9SJJ3Pfam:PF05920Pfam:PF07526Pfam:Q9SJJ3Pfscan:PS50071
PhylomeDB:Q9SJJ3PIR:D84679PRIDE:Q9SJJ3PRO:PR:Q9SJJ3PROSITE:PS00027PROSITE:PS50071ProteinModelPortal:Q9SJJ3
Proteomes:UP000006548RefSeq:NP_180366.1SMART:SM00389SMART:SM00574SMR:Q9SJJ3STRING:3702.AT2G27990.1SUPFAM:SSF46689
TAIR:AT2G27990tair10-symbols:BLH8tair10-symbols:PNFUniGene:At.38689UniProt:Q9SJJ3
Coordinates (TAIR10) chr2:-:11921540..11923902
Molecular Weight (calculated) 65779.10 Da
IEP (calculated) 8.25
GRAVY (calculated) -0.64
Length 584 amino acids
Sequence (TAIR10)
(BLAST)
001: MDMIKPDFQQ IRRDKFRVEQ MNDFPNTWTQ QQHQNIRIPN NLDLIGILQN QISVPVQTDL YQDSAATFMN MPQSIHRDPQ GPSNWRISDL SQPSTVNHGY
101: DQAGIRPNNV ADLLSDHFSS RNQILDRPLY VGRDSIPQSS MIRRSEVSCL DDNQKGCVTV ACSGTGNEIL RSSYDQGSSS GSYRGEFSFL PSLENQSVAH
201: NASNWNHGPV NVTATSHTNS KKGFPLSLLS DIPPSRDVGN AAVLSTMNIH GPLGPFTGYA SILKSSRFLE PAQKMLEEFC ISYASKIISR SESTSMEDDD
301: DDDDNLSGFS SSSEPLEPKN RLKKAKLLFL QEEVCKWYKL YNHQLQTVMS SFNTVAGLNT ATPYISLALK RTSRSFKALR TAIAEHVKQI SSHSSNGNNN
401: NRFQKRQRSL IGNNVGFESQ QQHIWRPQRG LPERAVAVLR AWLFDHFLHP YPTDSDKQML ATQTGLSRNQ VSNWFINARV RLWKPMVEEI HTLETKAIKN
501: ADTSHNIEPS NRPNTVSSPS HEQTLTGLSG TKRSRLEYMD MVGFNRGNVS LTLELRRGVD NVIQTQTQDH QFGTGSQMFH DFVG
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)