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AT2G27960.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
cytosol 0.939
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
FP Images

Arabidopsis cell culture (mitochondrial marker)

At2g27960-GFP
(full-length)
mitochondrial marker-RFPoverlay

Images by Sandra Tanz
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : cyclin-dependent kinase-subunit 1
Curator
Summary (TAIR10)
catalytic subunit of cyclin dependent kinase 1. physically interact with cyclin-dependent kinases (CDKs) and play an essential, but yet not entirely resolved, role in the regulation of the cell cycle
Computational
Description (TAIR10)
cyclin-dependent kinase-subunit 1 (CKS1); CONTAINS InterPro DOMAIN/s: Cyclin-dependent kinase, regulatory subunit (InterPro:IPR000789); BEST Arabidopsis thaliana protein match is: CDK-subunit 2 (TAIR:AT2G27970.1); Has 657 Blast hits to 657 proteins in 207 species: Archae - 0; Bacteria - 0; Metazoa - 305; Fungi - 139; Plants - 105; Viruses - 0; Other Eukaryotes - 108 (source: NCBI BLink).
Protein Annotations
BioGrid:2690DNASU:817340eggNOG:ENOG4111UANeggNOG:KOG3484EMBL:AC006929EMBL:AJ000016EMBL:AK175719
EMBL:AK175828EMBL:AK176119EMBL:AY088339EMBL:BT024528EMBL:CP002685EnsemblPlants:AT2G27960EnsemblPlants:AT2G27960.1
entrez:817340Gene3D:3.30.170.10GeneID:817340Genevisible:O23249GO:GO:0000278GO:GO:0005737GO:GO:0016538
GO:GO:0042023GO:GO:0051301GO:GO:0051726Gramene:AT2G27960.1hmmpanther:PTHR23415HOGENOM:HOG000157009InParanoid:O23249
IntAct:O23249InterPro:IPR000789KEGG:ath:AT2G27960KO:K02219OMA:HVMLPKNPaxDb:O23249Pfam:O23249
Pfam:PF01111PhylomeDB:O23249PIR:A84679PRIDE:O23249PRINTS:PR00296PRO:PR:O23249PROSITE:PS00944
ProteinModelPortal:O23249Proteomes:UP000006548RefSeq:NP_180363.1scanprosite:PS00944SMART:SM01084SMR:O23249STRING:3702.AT2G27960.1
SUPFAM:SSF55637TAIR:AT2G27960tair10-symbols:CKS1tair10-symbols:CKS1ATUniGene:At.14UniGene:At.74081UniProt:O23249
Coordinates (TAIR10) chr2:-:11910903..11911543
Molecular Weight (calculated) 10521.60 Da
IEP (calculated) 9.47
GRAVY (calculated) -0.82
Length 87 amino acids
Sequence (TAIR10)
(BLAST)
1: MGQIQYSEKY FDDTFEYRHV VLPPEVAKLL PKNRLLSENE WRAIGVQQSR GWVHYAVHRP EPHIMLFRRP LNYQQQQENQ AQNMLVK
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)