AT2G27950.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Ring/U-Box superfamily protein | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Ring/U-Box superfamily protein; FUNCTIONS IN: zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT5G04460.3); Has 608 Blast hits to 493 proteins in 135 species: Archae - 2; Bacteria - 207; Metazoa - 113; Fungi - 27; Plants - 119; Viruses - 0; Other Eukaryotes - 140 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr2:-:11899422..11903171 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 94775.60 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 4.40 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.90 | ||||||||||||||||||||||||||||||||
| Length | 839 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MAIAGLQNIL VIDSSFRRDS EVQATRQREN EGRSSVRASS LLQMWRELED DHVMGHARER DGERRSVSSP SNTMRGNGCD SNISAHDIVR DSVNLGENEL 101: GGWSPTQSHV GSHNSSEDLG PFQSEHFSDL GMGERERVRQ IFREWTSSGT GQHTDSASQA TNSSRAEWLG ETEQERVRII REMVQMNSQQ RPALGDLREE 201: QPIEGANQIE RVLDGIVVNP NSIQNEHARR GIRKLCGRQV WVDMLKMAEM ERQRELEGLM QHHAVSNFAH RNRIQALLRG RFLRNGDNDD KEKPTSSAAT 301: ELGFLRERHT VSELREEFIS RLDRSASGQA SSSHSETSSN AETDHNRGEQ NDLNCLDSIN DADGGSDQNG READNQSSLD EITNSGRCCS RSTSLEERTA 401: RVEGWQRSEI DDFSQRRNDT EVDLNATGCS SSSIHGDEIR YGCQLRETIE IPYEQSLQIS EEIATMGPIN RTTNFQENLG ESINLTVTLE EQTVEQMENE 501: ESDWQLINGA TSAWRDDAEE EADTDVPENF PNQLSQLSSV DEDREANILG ELTEMQPDDD AASLQSTIQD WSEEHSDQDT VSMGRATTFF PPDDGNENNM 601: ELRELSSRRR VSNLLQSGFR ENLSQLIQSY MDRRSQNPVD WEEAETYSDH TIVGEDTEQQ DDAQSGGQEL DAVESPPLTL PSPVIPIQPR WDHDRSHSNW 701: PAHDLHQGIG MDWDSINDLR VDMGRIQQRM DNLQRMLEAC MEMQLELQRS IRQEVSAAMH RSTDQPGPSK DTASYESKWE YVRKGICCVC CESNIDSLLY 801: RCGHMNTCEK CAKKLVEAGG KCPMCQAPVI EVVRAYSIL |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)