suba logo
AT2G27920.1
Subcellular Consensus
(Prediction and Experimental)

min: heatmap :max

.
SUBAcon:
extracellular 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:28155257 (2017): extracellular region plant-type cell wall
  • PMID:26572690 (2016): extracellular region plant-type cell wall
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : serine carboxypeptidase-like 51
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
serine carboxypeptidase-like 51 (SCPL51); FUNCTIONS IN: serine-type carboxypeptidase activity; INVOLVED IN: proteolysis; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase S10, serine carboxypeptidase (InterPro:IPR001563), Peptidase S10, serine carboxypeptidase, active site (InterPro:IPR018202); BEST Arabidopsis thaliana protein match is: serine carboxypeptidase-like 50 (TAIR:AT1G15000.1); Has 3757 Blast hits to 3498 proteins in 425 species: Archae - 0; Bacteria - 395; Metazoa - 679; Fungi - 928; Plants - 1340; Viruses - 0; Other Eukaryotes - 415 (source: NCBI BLink).
Protein Annotations
EC:3.4.16.-eggNOG:COG2939eggNOG:KOG1283EMBL:AC006929EMBL:AF412049EMBL:AK175926EMBL:AK176585
EMBL:BT003041EMBL:CP002685EnsemblPlants:AT2G27920EnsemblPlants:AT2G27920.1entrez:817336ESTHER:arath-AT2G27920ExpressionAtlas:Q67Y83
Gene3D:3.40.50.1820GeneID:817336Genevisible:Q67Y83GO:GO:0004185GO:GO:0005576GO:GO:0051603hmmpanther:PTHR11802
hmmpanther:PTHR11802:SF65HOGENOM:HOG000242971InParanoid:Q67Y83InterPro:IPR001563InterPro:IPR018202InterPro:IPR029058KEGG:ath:AT2G27920
KO:K09646MEROPS:S10.017ncoils:CoilOMA:IASGQWKPANTHER:PTHR11802PaxDb:Q67Y83Pfam:PF00450
Pfam:Q67Y83Pfscan:PS51257PhylomeDB:Q67Y83PIR:E84678PRIDE:Q67Y83PRINTS:PR00724PRO:PR:Q67Y83
PROSITE:PS00131ProteinModelPortal:Q67Y83Proteomes:UP000006548RefSeq:NP_001031434.1RefSeq:NP_565663.1scanprosite:PS00131SMR:Q67Y83
STRING:3702.AT2G27920.1SUPFAM:SSF53474TAIR:AT2G27920tair10-symbols:SCPL51UniGene:At.21190UniProt:Q67Y83
Coordinates (TAIR10) chr2:-:11885777..11889043
Molecular Weight (calculated) 51755.10 Da
IEP (calculated) 5.72
GRAVY (calculated) -0.22
Length 461 amino acids
Sequence (TAIR10)
(BLAST)
001: MKTTVVYLVI LCLIVSCTNG ETKHVRKINS DGSEAWGYVE VRPKAHMFWW HYKSPYRVEN PSKPWPIILW LQGGPGASGV GIGNFQEVGP LDTFLKPRNS
101: TWLKKADLLF VDSPVGAGYS FVEGNQKDLY VKSDEEAAQD LTKLLQQLFN KNQTLNQSPL FIVAESYGGK IAVKLGLSVI DAVQSGKLKL HLGGVILGDS
201: WISPEDFVFS WGPLLKHVSR LDDNGLDSSN SLAEKIKTQI KNGEYVGATQ TWMDLENLIS SKSNFVDFYN FLLDTGMDPV SLTTSLKIKK EEKIKKYSRY
301: LNDMRSLSDV EDVEGDLDKL MNGVIKKKLK IIPNDLIWGN NSDDVFTAME AAFMKPVIED VDELLATGVD VTIYNGQLDV ICSTSGTEAW VHKLRWEGLE
401: EFKKMEREPL FCESDRATRG FTKSYKNLHF YWILGAGHFV PVDEPCVALK MVGEITKSPQ L
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)