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AT2G27900.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
golgi 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:25900983 (2015): Golgi
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF2451, C-terminal (InterPro:IPR019514), Vacuolar protein sorting-associated protein 54 (InterPro:IPR019515); Has 316 Blast hits to 252 proteins in 92 species: Archae - 0; Bacteria - 2; Metazoa - 200; Fungi - 2; Plants - 68; Viruses - 0; Other Eukaryotes - 44 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410XS88eggNOG:KOG2939EMBL:AY081355EMBL:BT010132EMBL:CP002685EnsemblPlants:AT2G27900EnsemblPlants:AT2G27900.1
EnsemblPlants:AT2G27900.2entrez:817335GeneID:817335Gramene:AT2G27900.1Gramene:AT2G27900.2hmmpanther:PTHR13258hmmpanther:PTHR13258:SF0
InterPro:IPR019514InterPro:IPR019515KEGG:ath:AT2G27900ncoils:CoilOMA:HIPSEENPfam:PF10474Pfam:PF10475
PhylomeDB:Q8RXC2Proteomes:UP000006548RefSeq:NP_001031433.1RefSeq:NP_180357.2STRING:3702.AT2G27900.1TAIR:AT2G27900UniGene:At.38703
UniProt:Q8RXC2
Coordinates (TAIR10) chr2:+:11877654..11885238
Molecular Weight (calculated) 124922.00 Da
IEP (calculated) 5.66
GRAVY (calculated) -0.23
Length 1124 amino acids
Sequence (TAIR10)
(BLAST)
0001: MQPNLFFPFG SVLGNPFLFN GGGDLNELGS GAAFESSRVF FLLPFLLSQG TGVMDLSKVG EKFLSSVKSA TSLGLLPSPS ISDRPEIPAR AAAAAAVARA
0101: LAGLPSDQRL SISSTATELN SIYGNRPLPQ QVEELEEGFY EEDFDPVRHI LENVPDDESE LAYFEKQATL RLVQLDKVAE TLSHHVMEHH EVMVKGMNLV
0201: RELEKDLKIA NVICKNGRRN LTSSMNEASR DLIVHTHSKK KQALLDMLPI LTDLRHARVM QSNLEDLVED GNYCKAFQVL SEYLQLLDSL SEFSAAQEMT
0301: RGVEVWLGRT LHKLDSLLLG VCQEFKEDSY VMVLDAYALI GDVSGLAEKI QSFFMQEVIS ETHSVLKSIV GEDNSAATQY SRLTYSDLCL QTPESKFRQC
0401: LLRTLAVLFQ LIYSYHEIMS FTPEKEAEIL VSPSLATTQM VDSVTGSSCD PQDGGLLPGS IPPCTISAEE SDGSGTSSSV QLASNIAIDE SRNSEDRVSS
0501: SESPWYYLRK ESAAFVSETL QRGRRNLWQL TTSRVSVLLS SPGASSTSIH QFLKNYEDLS IFILAGEAFC GFEVVDFREK LKGVCENYFT AFHRQSMHAL
0601: KMVLEKETWT KLSPDTVQAI NFAGLVGDGA PLIISSRSAS GSSRFPHSDK PSNSIDPSGN RSGFSYWLKS GNPFSAKLTH YREDQDYSSI NGEDHEGNDS
0701: IHDDVVNPKI RDIKRINGGS PVSEDENEDL LADFIDEDSQ LPRRSFTRSQ SRTSSSHFST NDDLTAQTGS SLCLLRSMDK YARLMQKLEI VNAEFFKGIC
0801: QLFGVFFYFV FQVFGQENTN SGGKGVSDSF NHRLKSCLSR ISQECEQWIK PHVSSSPSSS LAFPNTVHSL ADVTPASPLN TSGHLSGVSF SLKERCAAVD
0901: TVSLVARVLH KSKAHLQSML MSRNGSLVED FFGQLVGSVP DLTEHLHRTT ARILLHVNGY VDRIANSKWE IKELGMEHNG YVDLMLGEFK HYKTRLAHGG
1001: IPQEVQNLLL EYGVEIFAEM LVEGLSRIKR CTDEGRVLMS LDLQVLINGL QHFVPTKVKP KLQIVETFIK AYYLPETEYV HWARAHPEYT KAQVVGLVNL
1101: VATMKGWKRK TRLEVIEKIE SASM
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)